Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3049418..3049508 Replicon chromosome
Accession NZ_CP034481
Organism Rahnella aquatilis strain KM25

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3049419..3049508 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3049418..3049508 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EJP79_RS13915 3044546..3046525 + 1980 WP_126124992.1 MBL fold metallo-hydrolase -
EJP79_RS13920 3046584..3047372 + 789 WP_119261800.1 hypothetical protein -
EJP79_RS13925 3047573..3048484 - 912 WP_119261801.1 cation diffusion facilitator family transporter -
EJP79_RS13935 3049150..3049302 + 153 WP_072012305.1 tyrosine-type recombinase/integrase -
- 3049418..3049508 + 91 - - Antitoxin
- 3049419..3049508 - 90 - - Toxin
EJP79_RS13940 3049664..3049999 - 336 WP_013576173.1 YebY family protein -
EJP79_RS13945 3050051..3050935 - 885 WP_037037430.1 copper homeostasis membrane protein CopD -
EJP79_RS13950 3050939..3051322 - 384 WP_013576175.1 copper homeostasis periplasmic binding protein CopC -
EJP79_RS13955 3051464..3051970 - 507 WP_013576176.1 non-heme ferritin -
EJP79_RS13960 3052377..3052607 + 231 WP_013576177.1 DNA polymerase III subunit theta -
EJP79_RS13965 3052627..3053583 - 957 WP_013576178.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 90 bp

>T116124 NZ_CP034481:c3049508-3049419 [Rahnella aquatilis]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT

Antitoxin


Download         Length: 91 bp

>AT116124 NZ_CP034481:3049418-3049508 [Rahnella aquatilis]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References