Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicA |
| Location | 6263716..6264127 | Replicon | chromosome |
| Accession | NZ_CP034449 | ||
| Organism | Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | EJ072_RS29855 | Protein ID | WP_126082529.1 |
| Coordinates | 6263927..6264127 (-) | Length | 67 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | - |
| Locus tag | EJ072_RS29850 | Protein ID | WP_126082528.1 |
| Coordinates | 6263716..6263922 (-) | Length | 69 a.a. |
Genomic Context
Location: 6259046..6259831 (786 bp)
Type: Others
Protein ID: WP_126082522.1
Type: Others
Protein ID: WP_126082522.1
Location: 6261139..6262260 (1122 bp)
Type: Others
Protein ID: WP_126082524.1
Type: Others
Protein ID: WP_126082524.1
Location: 6259859..6260830 (972 bp)
Type: Others
Protein ID: WP_126082523.1
Type: Others
Protein ID: WP_126082523.1
Location: 6262281..6262475 (195 bp)
Type: Others
Protein ID: WP_126082525.1
Type: Others
Protein ID: WP_126082525.1
Location: 6262503..6262955 (453 bp)
Type: Others
Protein ID: WP_126082526.1
Type: Others
Protein ID: WP_126082526.1
Location: 6263304..6263675 (372 bp)
Type: Others
Protein ID: WP_126082527.1
Type: Others
Protein ID: WP_126082527.1
Location: 6263716..6263922 (207 bp)
Type: Antitoxin
Protein ID: WP_126082528.1
Type: Antitoxin
Protein ID: WP_126082528.1
Location: 6263927..6264127 (201 bp)
Type: Toxin
Protein ID: WP_126082529.1
Type: Toxin
Protein ID: WP_126082529.1
Location: 6264136..6267912 (3777 bp)
Type: Others
Protein ID: WP_126082530.1
Type: Others
Protein ID: WP_126082530.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJ072_RS29820 | 6259046..6259831 | + | 786 | WP_126082522.1 | phosphodiester glycosidase family protein | - |
| EJ072_RS29825 | 6259859..6260830 | - | 972 | WP_126082523.1 | Tim44 domain-containing protein | - |
| EJ072_RS29830 | 6261139..6262260 | + | 1122 | WP_126082524.1 | glycoside hydrolase family 25 protein | - |
| EJ072_RS29835 | 6262281..6262475 | - | 195 | WP_126082525.1 | hypothetical protein | - |
| EJ072_RS29840 | 6262503..6262955 | - | 453 | WP_126082526.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| EJ072_RS29845 | 6263304..6263675 | - | 372 | WP_126082527.1 | VOC family protein | - |
| EJ072_RS29850 | 6263716..6263922 | - | 207 | WP_126082528.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| EJ072_RS29855 | 6263927..6264127 | - | 201 | WP_126082529.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| EJ072_RS29860 | 6264136..6267912 | - | 3777 | WP_126082530.1 | vitamin B12-dependent ribonucleotide reductase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 67 a.a. Molecular weight: 7328.57 Da Isoelectric Point: 10.7459
>T116086 WP_126082529.1 NZ_CP034449:c6264127-6263927 [Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1]
MPPRLTVREVIRMLEADGWYLVATKGSHRQYKHKIKAGRVTVAGKPSEEVAPGTLNSILKQSGLKE
MPPRLTVREVIRMLEADGWYLVATKGSHRQYKHKIKAGRVTVAGKPSEEVAPGTLNSILKQSGLKE
Download Length: 201 bp
>T116086 NZ_CP034449:c6264127-6263927 [Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1]
ATGCCGCCCCGGCTTACGGTCCGCGAAGTAATTCGCATGCTGGAGGCCGACGGTTGGTATCTGGTTGCAACCAAAGGCAG
CCATCGCCAATATAAGCACAAAATCAAAGCCGGCCGCGTCACCGTGGCCGGCAAGCCGTCTGAAGAGGTTGCGCCAGGAA
CGCTGAACAGCATTCTCAAGCAGTCCGGCTTAAAGGAGTGA
ATGCCGCCCCGGCTTACGGTCCGCGAAGTAATTCGCATGCTGGAGGCCGACGGTTGGTATCTGGTTGCAACCAAAGGCAG
CCATCGCCAATATAAGCACAAAATCAAAGCCGGCCGCGTCACCGTGGCCGGCAAGCCGTCTGAAGAGGTTGCGCCAGGAA
CGCTGAACAGCATTCTCAAGCAGTCCGGCTTAAAGGAGTGA
Antitoxin
Download Length: 69 a.a. Molecular weight: 7320.32 Da Isoelectric Point: 4.3178
>AT116086 WP_126082528.1 NZ_CP034449:c6263922-6263716 [Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1]
MRYAVVIEKAGSNFSAYVPDLPGCIATGATVPEVENEIRDAIRFHIEGLRADGLEVPKAVSLAEYVEA
MRYAVVIEKAGSNFSAYVPDLPGCIATGATVPEVENEIRDAIRFHIEGLRADGLEVPKAVSLAEYVEA
Download Length: 207 bp
>AT116086 NZ_CP034449:c6263922-6263716 [Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1]
ATGCGCTACGCGGTGGTGATCGAAAAAGCCGGAAGCAACTTTTCCGCATATGTTCCTGACCTGCCAGGCTGCATCGCGAC
AGGTGCAACAGTGCCTGAAGTGGAGAACGAAATCCGCGACGCAATTCGTTTCCACATAGAGGGTCTGCGCGCCGATGGGC
TGGAAGTTCCCAAGGCAGTCAGTCTCGCTGAGTATGTTGAAGCATAG
ATGCGCTACGCGGTGGTGATCGAAAAAGCCGGAAGCAACTTTTCCGCATATGTTCCTGACCTGCCAGGCTGCATCGCGAC
AGGTGCAACAGTGCCTGAAGTGGAGAACGAAATCCGCGACGCAATTCGTTTCCACATAGAGGGTCTGCGCGCCGATGGGC
TGGAAGTTCCCAAGGCAGTCAGTCTCGCTGAGTATGTTGAAGCATAG