Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafQ-relB/YafQ-RelB
Location 846459..846990 Replicon chromosome
Accession NZ_CP034449
Organism Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1

Toxin (Protein)


Gene name yafQ Uniprot ID -
Locus tag EJ072_RS04155 Protein ID WP_126078686.1
Coordinates 846718..846990 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag EJ072_RS04150 Protein ID WP_126078685.1
Coordinates 846459..846716 (+) Length 86 a.a.

Genomic Context

EJ072_RS04140EJ072_RS04145EJ072_RS04150EJ072_RS04155EJ072_RS04160EJ072_RS04170EJ072_RS04165EJ072_RS04175
Location: 843278..844243 (966 bp)
Type: Others
Protein ID: WP_126078684.1
Location: 844325..846379 (2055 bp)
Type: Others
Protein ID: WP_126083495.1
Location: 846459..846716 (258 bp)
Type: Antitoxin
Protein ID: WP_126078685.1
Location: 846718..846990 (273 bp)
Type: Toxin
Protein ID: WP_126078686.1
Location: 847207..848271 (1065 bp)
Type: Others
Protein ID: WP_126078687.1
Location: 850099..850290 (192 bp)
Type: Others
Protein ID: WP_126083496.1
Location: 848285..849790 (1506 bp)
Type: Others
Protein ID: WP_126078688.1
Location: 850367..851419 (1053 bp)
Type: Others
Protein ID: WP_042638932.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
EJ072_RS04140843278..844243+966WP_126078684.1sugar-binding transcriptional regulator-
EJ072_RS04145844325..846379+2055WP_126083495.1bifunctional aldolase/short-chain dehydrogenase-
EJ072_RS04150846459..846716+258WP_126078685.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
EJ072_RS04155846718..846990+273WP_126078686.1type II toxin-antitoxin system YafQ family toxinToxin
EJ072_RS04160847207..848271+1065WP_126078687.1D-alanine--D-alanine ligase-
EJ072_RS04165848285..849790-1506WP_126078688.1winged helix-turn-helix domain-containing tetratricopeptide repeat protein-
EJ072_RS04170850099..850290+192WP_126083496.1DUF1127 domain-containing protein-
EJ072_RS04175850367..851419-1053WP_042638932.1substrate-binding domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(7-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(6-82)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10569.21 Da        Isoelectric Point: 9.9120

>T116083 WP_126078686.1 NZ_CP034449:846718-846990 [Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1]
MLIPVRSGQFRRDVKRMEKRGKDLGKLRQILVHLIGEHELPPIYKDHPLKGDWKGYRDAHIEPDWLLIYRVANGELQLAR
TGSHSDLFNE

Download         Length: 273 bp

>T116083 NZ_CP034449:846718-846990 [Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1]
ATGTTGATCCCCGTTCGCTCCGGGCAATTCCGCCGGGATGTGAAGCGTATGGAGAAGCGTGGCAAGGATCTTGGCAAGTT
GCGTCAGATTTTAGTTCACCTGATCGGCGAGCATGAACTGCCGCCGATCTACAAAGACCATCCGCTGAAAGGCGACTGGA
AGGGCTATCGTGACGCTCACATCGAACCGGATTGGCTTTTGATCTATCGCGTGGCGAATGGAGAGCTGCAGCTTGCACGA
ACCGGCTCGCATTCGGACCTCTTCAACGAGTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9223.63 Da        Isoelectric Point: 6.3276

>AT116083 WP_126078685.1 NZ_CP034449:846459-846716 [Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1]
MASDTVVRARIDTATKDQATEALAAMGLSVSDAIRLLLVRVAADKEFPFPVKVPNTTTRKAMAELEKGKGKRFASADELF
NDLEI

Download         Length: 258 bp

>AT116083 NZ_CP034449:846459-846716 [Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1]
ATGGCATCAGATACGGTAGTCCGCGCTCGCATCGATACCGCAACGAAGGATCAGGCTACGGAAGCCTTGGCGGCCATGGG
GTTGTCGGTTTCCGACGCCATTCGCCTGCTGTTGGTCCGTGTCGCCGCGGACAAAGAATTTCCCTTTCCGGTGAAAGTCC
CGAACACAACCACGCGAAAGGCCATGGCCGAATTGGAGAAGGGCAAGGGCAAGCGGTTCGCTTCGGCCGACGAGCTATTC
AACGATCTGGAAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References