Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1-VagC |
| Location | 5615932..5616602 | Replicon | chromosome |
| Accession | NZ_CP034443 | ||
| Organism | Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | EJ066_RS27170 | Protein ID | WP_126043011.1 |
| Coordinates | 5615932..5616330 (-) | Length | 133 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | EJ066_RS27175 | Protein ID | WP_126043012.1 |
| Coordinates | 5616330..5616602 (-) | Length | 91 a.a. |
Genomic Context
Location: 5612073..5613101 (1029 bp)
Type: Others
Protein ID: WP_126043007.1
Type: Others
Protein ID: WP_126043007.1
Location: 5613134..5613985 (852 bp)
Type: Others
Protein ID: WP_126043008.1
Type: Others
Protein ID: WP_126043008.1
Location: 5613978..5614862 (885 bp)
Type: Others
Protein ID: WP_126043009.1
Type: Others
Protein ID: WP_126043009.1
Location: 5614875..5615915 (1041 bp)
Type: Others
Protein ID: WP_126043010.1
Type: Others
Protein ID: WP_126043010.1
Location: 5616837..5617823 (987 bp)
Type: Others
Protein ID: WP_126043013.1
Type: Others
Protein ID: WP_126043013.1
Location: 5618075..5618524 (450 bp)
Type: Others
Protein ID: WP_126043014.1
Type: Others
Protein ID: WP_126043014.1
Location: 5615932..5616330 (399 bp)
Type: Toxin
Protein ID: WP_126043011.1
Type: Toxin
Protein ID: WP_126043011.1
Location: 5616330..5616602 (273 bp)
Type: Antitoxin
Protein ID: WP_126043012.1
Type: Antitoxin
Protein ID: WP_126043012.1
Location: 5618521..5619006 (486 bp)
Type: Others
Protein ID: WP_126044064.1
Type: Others
Protein ID: WP_126044064.1
Location: 5619078..5620064 (987 bp)
Type: Others
Protein ID: WP_126043015.1
Type: Others
Protein ID: WP_126043015.1
Location: 5620061..5621041 (981 bp)
Type: Others
Protein ID: WP_126043016.1
Type: Others
Protein ID: WP_126043016.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJ066_RS27150 | 5612073..5613101 | + | 1029 | WP_126043007.1 | sulfate ABC transporter substrate-binding protein | - |
| EJ066_RS27155 | 5613134..5613985 | + | 852 | WP_126043008.1 | sulfate ABC transporter permease subunit CysT | - |
| EJ066_RS27160 | 5613978..5614862 | + | 885 | WP_126043009.1 | sulfate ABC transporter permease subunit CysW | - |
| EJ066_RS27165 | 5614875..5615915 | + | 1041 | WP_126043010.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| EJ066_RS27170 | 5615932..5616330 | - | 399 | WP_126043011.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| EJ066_RS27175 | 5616330..5616602 | - | 273 | WP_126043012.1 | antitoxin | Antitoxin |
| EJ066_RS27180 | 5616837..5617823 | + | 987 | WP_126043013.1 | sulfate ABC transporter substrate-binding protein | - |
| EJ066_RS27185 | 5618075..5618524 | + | 450 | WP_126043014.1 | Rrf2 family transcriptional regulator | - |
| EJ066_RS27190 | 5618521..5619006 | - | 486 | WP_126044064.1 | gluconokinase | - |
| EJ066_RS27195 | 5619078..5620064 | - | 987 | WP_126043015.1 | ABC transporter permease | - |
| EJ066_RS27200 | 5620061..5621041 | - | 981 | WP_126043016.1 | ABC transporter permease | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 133 a.a. Molecular weight: 14126.42 Da Isoelectric Point: 5.7385
>T116058 WP_126043011.1 NZ_CP034443:c5616330-5615932 [Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2]
MRFMLDTNIISDMIRNPAGKAASAMVREGDAAVCTSIVVASELRYGCARKGSAKLLKKVEELLAEIPVLPLDVPVDTEYG
ALRTELEGAGQTIGHNDLFIAAHACALGITLVTANTGEFNRIKGLKIENWLA
MRFMLDTNIISDMIRNPAGKAASAMVREGDAAVCTSIVVASELRYGCARKGSAKLLKKVEELLAEIPVLPLDVPVDTEYG
ALRTELEGAGQTIGHNDLFIAAHACALGITLVTANTGEFNRIKGLKIENWLA
Download Length: 399 bp
>T116058 NZ_CP034443:c5616330-5615932 [Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2]
ATGCGGTTCATGCTGGACACGAACATTATCAGCGACATGATCCGAAACCCGGCTGGCAAAGCAGCAAGTGCAATGGTGCG
CGAGGGAGACGCCGCCGTGTGCACCAGCATCGTGGTCGCCTCGGAACTGCGATATGGCTGCGCCAGGAAGGGATCGGCCA
AGCTGCTTAAGAAAGTCGAGGAGCTGCTGGCTGAGATCCCTGTTTTGCCGCTCGATGTGCCGGTAGATACCGAGTACGGC
GCACTTCGCACCGAGCTGGAAGGCGCGGGCCAGACCATTGGCCACAATGACCTTTTTATTGCTGCCCACGCCTGCGCACT
GGGCATTACGCTGGTGACGGCCAACACGGGAGAATTCAACCGGATCAAGGGCTTGAAGATCGAGAACTGGCTAGCATAG
ATGCGGTTCATGCTGGACACGAACATTATCAGCGACATGATCCGAAACCCGGCTGGCAAAGCAGCAAGTGCAATGGTGCG
CGAGGGAGACGCCGCCGTGTGCACCAGCATCGTGGTCGCCTCGGAACTGCGATATGGCTGCGCCAGGAAGGGATCGGCCA
AGCTGCTTAAGAAAGTCGAGGAGCTGCTGGCTGAGATCCCTGTTTTGCCGCTCGATGTGCCGGTAGATACCGAGTACGGC
GCACTTCGCACCGAGCTGGAAGGCGCGGGCCAGACCATTGGCCACAATGACCTTTTTATTGCTGCCCACGCCTGCGCACT
GGGCATTACGCTGGTGACGGCCAACACGGGAGAATTCAACCGGATCAAGGGCTTGAAGATCGAGAACTGGCTAGCATAG
Antitoxin
Download Length: 91 a.a. Molecular weight: 10206.70 Da Isoelectric Point: 4.8952
>AT116058 WP_126043012.1 NZ_CP034443:c5616602-5616330 [Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2]
MPQRRHSTPPPKEAKLFRNNRSQAVRIPVEFELPGEKVLISREGDRLVIEPVRKPGLTALLAQWAKEPPLGPEDDFPEID
DAPIESVEIF
MPQRRHSTPPPKEAKLFRNNRSQAVRIPVEFELPGEKVLISREGDRLVIEPVRKPGLTALLAQWAKEPPLGPEDDFPEID
DAPIESVEIF
Download Length: 273 bp
>AT116058 NZ_CP034443:c5616602-5616330 [Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2]
ATGCCCCAGCGCCGCCATTCAACCCCGCCACCGAAGGAGGCGAAGCTGTTCCGCAACAACCGCAGCCAGGCGGTGCGCAT
TCCCGTCGAGTTCGAGCTTCCCGGCGAAAAGGTCTTGATCAGCCGTGAAGGCGACCGCCTGGTCATCGAGCCGGTCCGCA
AACCTGGCCTCACAGCGCTGCTCGCCCAATGGGCGAAAGAGCCGCCGCTCGGTCCTGAAGACGACTTCCCGGAGATCGAC
GATGCGCCTATCGAATCCGTGGAAATTTTTTGA
ATGCCCCAGCGCCGCCATTCAACCCCGCCACCGAAGGAGGCGAAGCTGTTCCGCAACAACCGCAGCCAGGCGGTGCGCAT
TCCCGTCGAGTTCGAGCTTCCCGGCGAAAAGGTCTTGATCAGCCGTGAAGGCGACCGCCTGGTCATCGAGCCGGTCCGCA
AACCTGGCCTCACAGCGCTGCTCGCCCAATGGGCGAAAGAGCCGCCGCTCGGTCCTGAAGACGACTTCCCGGAGATCGAC
GATGCGCCTATCGAATCCGTGGAAATTTTTTGA