Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1-Phd |
| Location | 1111827..1112518 | Replicon | chromosome |
| Accession | NZ_CP034443 | ||
| Organism | Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | EJ066_RS05610 | Protein ID | WP_126035670.1 |
| Coordinates | 1112066..1112518 (+) | Length | 151 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | EJ066_RS05605 | Protein ID | WP_126035668.1 |
| Coordinates | 1111827..1112069 (+) | Length | 81 a.a. |
Genomic Context
Location: 1111827..1112069 (243 bp)
Type: Antitoxin
Protein ID: WP_126035668.1
Type: Antitoxin
Protein ID: WP_126035668.1
Location: 1112066..1112518 (453 bp)
Type: Toxin
Protein ID: WP_126035670.1
Type: Toxin
Protein ID: WP_126035670.1
Location: 1115842..1116495 (654 bp)
Type: Others
Protein ID: WP_126035674.1
Type: Others
Protein ID: WP_126035674.1
Location: 1107325..1108209 (885 bp)
Type: Others
Protein ID: WP_126035655.1
Type: Others
Protein ID: WP_126035655.1
Location: 1108239..1109768 (1530 bp)
Type: Others
Protein ID: WP_126035656.1
Type: Others
Protein ID: WP_126035656.1
Location: 1109768..1110328 (561 bp)
Type: Others
Protein ID: WP_126035659.1
Type: Others
Protein ID: WP_126035659.1
Location: 1110574..1110969 (396 bp)
Type: Others
Protein ID: WP_126035661.1
Type: Others
Protein ID: WP_126035661.1
Location: 1111066..1111761 (696 bp)
Type: Others
Protein ID: WP_126035666.1
Type: Others
Protein ID: WP_126035666.1
Location: 1112531..1113473 (943 bp)
Type: Others
Protein ID: Protein_1084
Type: Others
Protein ID: Protein_1084
Location: 1113571..1115754 (2184 bp)
Type: Others
Protein ID: WP_126035672.1
Type: Others
Protein ID: WP_126035672.1
Location: 1116585..1117172 (588 bp)
Type: Others
Protein ID: WP_126035676.1
Type: Others
Protein ID: WP_126035676.1
Loading, please wait
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJ066_RS05580 | 1107325..1108209 | - | 885 | WP_126035655.1 | F0F1 ATP synthase subunit gamma | - |
| EJ066_RS05585 | 1108239..1109768 | - | 1530 | WP_126035656.1 | F0F1 ATP synthase subunit alpha | - |
| EJ066_RS05590 | 1109768..1110328 | - | 561 | WP_126035659.1 | F0F1 ATP synthase subunit delta | - |
| EJ066_RS05595 | 1110574..1110969 | - | 396 | WP_126035661.1 | DUF4345 family protein | - |
| EJ066_RS05600 | 1111066..1111761 | - | 696 | WP_126035666.1 | aspartate/glutamate racemase family protein | - |
| EJ066_RS05605 | 1111827..1112069 | + | 243 | WP_126035668.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| EJ066_RS05610 | 1112066..1112518 | + | 453 | WP_126035670.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| EJ066_RS05615 | 1112531..1113473 | - | 943 | Protein_1084 | IS630 family transposase | - |
| EJ066_RS05620 | 1113571..1115754 | - | 2184 | WP_126035672.1 | primosomal protein N' | - |
| EJ066_RS05625 | 1115842..1116495 | + | 654 | WP_126035674.1 | fructose-6-phosphate aldolase | - |
| EJ066_RS05630 | 1116585..1117172 | - | 588 | WP_126035676.1 | hypothetical protein | - |
Associated MGEs
Loading, please wait
MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1112531..1113004 | 473 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 151 a.a. Molecular weight: 16274.55 Da Isoelectric Point: 7.2066
>T116055 WP_126035670.1 NZ_CP034443:1112066-1112518 [Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2]
MNGYLLDTSVLSVLAPDRAGLSPTFQAWLSRTGRRQTWYIPAIAAAEVQKGVAKLRRAGGAQRAERLERWLDGLLAEFDE
RVLSIGSAIARRAGEMEDAAIARGRSPGLPDILIAATALEHDLTILTANNRHFEALKVANLNPFGTEPEA
MNGYLLDTSVLSVLAPDRAGLSPTFQAWLSRTGRRQTWYIPAIAAAEVQKGVAKLRRAGGAQRAERLERWLDGLLAEFDE
RVLSIGSAIARRAGEMEDAAIARGRSPGLPDILIAATALEHDLTILTANNRHFEALKVANLNPFGTEPEA
Download Length: 453 bp
>T116055 NZ_CP034443:1112066-1112518 [Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2]
TTGAACGGGTACCTGCTCGACACTTCTGTGCTGTCGGTACTCGCGCCTGATCGTGCAGGGCTTTCGCCTACCTTTCAGGC
TTGGCTGTCACGGACCGGCAGACGCCAAACTTGGTATATTCCGGCTATAGCCGCTGCTGAAGTCCAGAAAGGCGTTGCCA
AGTTGAGGCGCGCCGGCGGCGCCCAGCGAGCCGAGCGCCTTGAGCGATGGCTTGACGGCCTACTGGCTGAATTCGATGAG
CGAGTCTTGTCAATAGGCTCCGCCATCGCCCGACGAGCAGGAGAAATGGAAGACGCGGCGATCGCTCGTGGGCGTAGCCC
TGGCCTACCGGACATTTTGATCGCCGCAACTGCTCTTGAGCACGACCTTACGATCTTGACTGCCAACAACCGTCATTTCG
AGGCCCTCAAGGTCGCAAACCTCAACCCATTTGGTACAGAACCCGAAGCCTAG
TTGAACGGGTACCTGCTCGACACTTCTGTGCTGTCGGTACTCGCGCCTGATCGTGCAGGGCTTTCGCCTACCTTTCAGGC
TTGGCTGTCACGGACCGGCAGACGCCAAACTTGGTATATTCCGGCTATAGCCGCTGCTGAAGTCCAGAAAGGCGTTGCCA
AGTTGAGGCGCGCCGGCGGCGCCCAGCGAGCCGAGCGCCTTGAGCGATGGCTTGACGGCCTACTGGCTGAATTCGATGAG
CGAGTCTTGTCAATAGGCTCCGCCATCGCCCGACGAGCAGGAGAAATGGAAGACGCGGCGATCGCTCGTGGGCGTAGCCC
TGGCCTACCGGACATTTTGATCGCCGCAACTGCTCTTGAGCACGACCTTACGATCTTGACTGCCAACAACCGTCATTTCG
AGGCCCTCAAGGTCGCAAACCTCAACCCATTTGGTACAGAACCCGAAGCCTAG
Antitoxin
Download Length: 81 a.a. Molecular weight: 8956.16 Da Isoelectric Point: 5.0644
>AT116055 WP_126035668.1 NZ_CP034443:1111827-1112069 [Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2]
MKTMQVREAKASFSALVEAAENGQPTIITKHGKPAAAVVPIAEARKLYPDRNDDFIDFLLTYPGGIELERNQSTLREYDF
MKTMQVREAKASFSALVEAAENGQPTIITKHGKPAAAVVPIAEARKLYPDRNDDFIDFLLTYPGGIELERNQSTLREYDF
Download Length: 243 bp
>AT116055 NZ_CP034443:1111827-1112069 [Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2]
ATGAAGACAATGCAGGTACGAGAGGCAAAGGCGAGCTTTTCTGCGCTTGTGGAGGCGGCGGAGAATGGCCAGCCTACGAT
TATTACCAAGCATGGCAAACCTGCCGCGGCGGTCGTGCCGATCGCAGAGGCGCGAAAGCTCTACCCAGATCGTAACGATG
ATTTTATTGACTTCCTTCTTACTTACCCAGGCGGCATCGAGCTTGAACGAAATCAATCGACGCTCCGGGAATATGACTTT
TGA
ATGAAGACAATGCAGGTACGAGAGGCAAAGGCGAGCTTTTCTGCGCTTGTGGAGGCGGCGGAGAATGGCCAGCCTACGAT
TATTACCAAGCATGGCAAACCTGCCGCGGCGGTCGTGCCGATCGCAGAGGCGCGAAAGCTCTACCCAGATCGTAACGATG
ATTTTATTGACTTCCTTCTTACTTACCCAGGCGGCATCGAGCTTGAACGAAATCAATCGACGCTCCGGGAATATGACTTT
TGA