Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012336..2012481 | Replicon | chromosome |
| Accession | NZ_CP034415 | ||
| Organism | Klebsiella pneumoniae strain C789 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012372..2012474 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012336..2012481 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJJ25_RS09745 | 2007466..2009526 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| EJJ25_RS09750 | 2009530..2010189 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| EJJ25_RS09755 | 2010268..2010498 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EJJ25_RS09760 | 2010611..2010985 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EJJ25_RS09765 | 2010989..2011858 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| EJJ25_RS09770 | 2011875..2012213 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2012336..2012481 | - | 146 | - | - | Antitoxin |
| - | 2012372..2012474 | + | 103 | - | - | Toxin |
| EJJ25_RS09775 | 2012849..2012992 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EJJ25_RS09780 | 2013097..2014065 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EJJ25_RS09785 | 2014222..2014875 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| EJJ25_RS09790 | 2014872..2015063 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EJJ25_RS09795 | 2015161..2015400 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EJJ25_RS09800 | 2015516..2016949 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115979 NZ_CP034415:2012372-2012474 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT115979 NZ_CP034415:c2012481-2012336 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
