Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 3641055..3641680 Replicon chromosome
Accession NZ_CP034408
Organism Klebsiella pneumoniae strain NH34

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag EJC76_RS20630 Protein ID WP_002882817.1
Coordinates 3641297..3641680 (+) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag EJC76_RS20625 Protein ID WP_004150355.1
Coordinates 3641055..3641297 (+) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EJC76_RS20600 3637046..3637645 + 600 WP_004151865.1 glucose-1-phosphatase -
EJC76_RS20605 3637639..3638499 + 861 WP_004146232.1 virulence factor BrkB family protein -
EJC76_RS20610 3638496..3638933 + 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
EJC76_RS20615 3638978..3639919 + 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
EJC76_RS20620 3639933..3640850 - 918 WP_004181612.1 alpha/beta hydrolase -
EJC76_RS20625 3641055..3641297 + 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
EJC76_RS20630 3641297..3641680 + 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
EJC76_RS20635 3641854..3642781 - 928 Protein_3518 formate dehydrogenase accessory protein FdhE -
EJC76_RS20640 3642778..3643413 - 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
EJC76_RS20645 3643410..3644312 - 903 WP_002882822.1 formate dehydrogenase subunit beta -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T115958 WP_002882817.1 NZ_CP034408:3641297-3641680 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T115958 NZ_CP034408:3641297-3641680 [Klebsiella pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT115958 WP_004150355.1 NZ_CP034408:3641055-3641297 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT115958 NZ_CP034408:3641055-3641297 [Klebsiella pneumoniae]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References