Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 123418..123689 | Replicon | chromosome |
| Accession | NZ_CP034399 | ||
| Organism | Escherichia coli strain CRE1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 123456..123559 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 123418..123689 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJC48_RS02400 | 120575..122014 | + | 1440 | WP_024198516.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EJC48_RS02405 | 122132..122368 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EJC48_RS02410 | 122473..122664 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EJC48_RS02415 | 122665..123321 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 123418..123689 | + | 272 | - | - | Antitoxin |
| - | 123456..123559 | - | 104 | - | - | Toxin |
| EJC48_RS02420 | 123717..124058 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EJC48_RS02425 | 124071..124943 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EJC48_RS02430 | 124947..125321 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EJC48_RS02435 | 125460..125690 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EJC48_RS02440 | 125792..126448 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EJC48_RS02445 | 126472..127134 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T115880 NZ_CP034399:c123559-123456 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT115880 NZ_CP034399:123418-123689 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
