Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 74290..74849 | Replicon | plasmid pO157 |
Accession | NZ_CP034385 | ||
Organism | Escherichia coli O157:H7 strain FRIK804 |
Toxin (Protein)
Gene name | relE | Uniprot ID | O82928 |
Locus tag | EJB16_RS27825 | Protein ID | WP_000421248.1 |
Coordinates | 74574..74849 (+) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | C1J8K5 |
Locus tag | EJB16_RS27820 | Protein ID | WP_001178089.1 |
Coordinates | 74290..74574 (+) | Length | 95 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EJB16_RS27780 | 69482..70042 | + | 561 | WP_000840472.1 | fertility inhibition protein FinO | - |
EJB16_RS27785 | 70175..70387 | + | 213 | WP_001302189.1 | ANR family transcriptional regulator | - |
EJB16_RS27790 | 70632..71093 | + | 462 | WP_001233853.1 | thermonuclease family protein | - |
EJB16_RS27795 | 71139..71348 | + | 210 | WP_001302200.1 | hemolysin expression modulator Hha | - |
EJB16_RS27800 | 71386..71724 | + | 339 | WP_000766796.1 | hypothetical protein | - |
EJB16_RS27805 | 71964..72218 | + | 255 | WP_000083831.1 | replication regulatory protein RepA | - |
EJB16_RS27810 | 72454..72528 | + | 75 | WP_001370046.1 | RepA leader peptide Tap | - |
EJB16_RS27815 | 72521..73378 | + | 858 | WP_000130945.1 | incFII family plasmid replication initiator RepA | - |
EJB16_RS27820 | 74290..74574 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
EJB16_RS27825 | 74574..74849 | + | 276 | WP_000421248.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
EJB16_RS27830 | 74944..75150 | + | 207 | WP_001105064.1 | hypothetical protein | - |
EJB16_RS27835 | 75250..75465 | - | 216 | Protein_79 | transposase | - |
EJB16_RS27840 | 75509..76075 | - | 567 | Protein_80 | IS3-like element IS600 family transposase | - |
EJB16_RS27845 | 76075..76491 | - | 417 | Protein_81 | IS91 family transposase | - |
EJB16_RS27850 | 76491..76676 | - | 186 | WP_001302179.1 | hypothetical protein | - |
EJB16_RS27855 | 76853..79063 | + | 2211 | WP_000592771.1 | catalase/peroxidase KatP | - |
EJB16_RS27860 | 79107..79496 | + | 390 | WP_001172748.1 | cytochrome b562 family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | stcE / exeE / exeG / hlyC / hlyA / hlyB / hlyD / toxB / espP | 1..92697 | 92697 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10735.42 Da Isoelectric Point: 9.9324
>T115833 WP_000421248.1 NZ_CP034385:74574-74849 [Escherichia coli O157:H7]
MELKWSSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFAGEYEIRYELNGQTIY
VLRLWHTRENR
MELKWSSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFAGEYEIRYELNGQTIY
VLRLWHTRENR
Download Length: 276 bp
>T115833 NZ_CP034385:74574-74849 [Escherichia coli O157:H7]
ATGGAACTGAAGTGGAGCAGTAAAGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTAGCCAGTAAACCTGC
TGCCGCCAGAACGGTACAGTCCCTGACACAGGCACCGGTCATTCTGTTAACTCATCCACGTATGGGGGAACAGTTATTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTAATGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG
ATGGAACTGAAGTGGAGCAGTAAAGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTAGCCAGTAAACCTGC
TGCCGCCAGAACGGTACAGTCCCTGACACAGGCACCGGTCATTCTGTTAACTCATCCACGTATGGGGGAACAGTTATTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTAATGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG
Antitoxin
Download Length: 95 a.a. Molecular weight: 10474.89 Da Isoelectric Point: 5.6558
>AT115833 WP_001178089.1 NZ_CP034385:74290-74574 [Escherichia coli O157:H7]
MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAW
ADSLSTDNPLPVPR
MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAW
ADSLSTDNPLPVPR
Download Length: 285 bp
>AT115833 NZ_CP034385:74290-74574 [Escherichia coli O157:H7]
ATGCAAATGAAAAACAATACCGCACAAGCAACAAAAGTCATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGA
CCAGATGGCCGCCAGACTGGAACGCTCCCGGGGTTGGGTTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGG
AGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGGTTATTGACCATCAGGCTGTACAGGCCTGG
GCGGACAGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA
ATGCAAATGAAAAACAATACCGCACAAGCAACAAAAGTCATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGA
CCAGATGGCCGCCAGACTGGAACGCTCCCGGGGTTGGGTTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGG
AGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGGTTATTGACCATCAGGCTGTACAGGCCTGG
GCGGACAGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2Z6FAZ0 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A731IHA8 |