Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3883382..3883898 Replicon chromosome
Accession NZ_CP034338
Organism Pseudomonas entomophila strain 1257

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag EJA05_RS18260 Protein ID WP_125859321.1
Coordinates 3883382..3883663 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag EJA05_RS18265 Protein ID WP_125464712.1
Coordinates 3883653..3883898 (-) Length 82 a.a.

Genomic Context

EJA05_RS18240EJA05_RS18245EJA05_RS18250EJA05_RS18270EJA05_RS18275EJA05_RS18255EJA05_RS18260EJA05_RS18265EJA05_RS18280EJA05_RS18285
Location: 3878665..3879480 (816 bp)
Type: Others
Protein ID: WP_125859317.1
Location: 3879617..3880978 (1362 bp)
Type: Others
Protein ID: WP_125859318.1
Location: 3881140..3881712 (573 bp)
Type: Others
Protein ID: WP_125859319.1
Location: 3884108..3884569 (462 bp)
Type: Others
Protein ID: WP_190306001.1
Location: 3884690..3885013 (324 bp)
Type: Others
Protein ID: WP_125859323.1
Location: 3881803..3883140 (1338 bp)
Type: Others
Protein ID: WP_125859320.1
Location: 3883382..3883663 (282 bp)
Type: Toxin
Protein ID: WP_125859321.1
Location: 3883653..3883898 (246 bp)
Type: Antitoxin
Protein ID: WP_125464712.1
Location: 3885024..3885752 (729 bp)
Type: Others
Protein ID: WP_125859324.1
Location: 3885870..3886616 (747 bp)
Type: Others
Protein ID: WP_125859325.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
EJA05_RS182403878665..3879480+816WP_125859317.1protein phosphatase 2C domain-containing protein-
EJA05_RS182453879617..3880978+1362WP_125859318.1hypothetical protein-
EJA05_RS182503881140..3881712+573WP_125859319.1ComF family protein-
EJA05_RS182553881803..3883140-1338WP_125859320.1OprD family porin-
EJA05_RS182603883382..3883663-282WP_125859321.1type II toxin-antitoxin system RelE/ParE family toxinToxin
EJA05_RS182653883653..3883898-246WP_125464712.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
EJA05_RS182703884108..3884569+462WP_190306001.1PaaI family thioesterase-
EJA05_RS182753884690..3885013+324WP_125859323.1DUF2790 domain-containing protein-
EJA05_RS182803885024..3885752-729WP_125859324.1hypothetical protein-
EJA05_RS182853885870..3886616-747WP_125859325.1sulfite exporter TauE/SafE family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(9-77)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10759.69 Da        Isoelectric Point: 10.9348

>T115753 WP_125859321.1 NZ_CP034338:c3883663-3883382 [Pseudomonas entomophila]
MTYKLEFLPSALKEWEKLGHTVREQAKKKLRERLVLPRGPADALRDLPNHYKIKLKSSGYRLVYRVEDQRVVVLVVAVGK
REGAAAYRSALKR

Download         Length: 282 bp

>T115753 NZ_CP034338:c3883663-3883382 [Pseudomonas entomophila]
ATGACCTATAAGCTCGAGTTTCTGCCCTCTGCGTTGAAGGAGTGGGAGAAACTTGGCCATACCGTGCGTGAGCAAGCCAA
GAAGAAACTGCGTGAGCGGCTGGTACTGCCCAGGGGGCCAGCGGACGCGCTGCGCGACTTGCCCAACCACTACAAGATCA
AACTCAAGTCCTCAGGTTATCGGCTGGTCTATCGGGTAGAGGATCAGCGAGTCGTTGTGCTGGTGGTGGCGGTAGGCAAG
CGCGAAGGCGCGGCGGCCTATCGCTCTGCTCTGAAGCGCTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8907.37 Da        Isoelectric Point: 4.6982

>AT115753 WP_125464712.1 NZ_CP034338:c3883898-3883653 [Pseudomonas entomophila]
MQNIFADITVSVSELKKNPTAVMAGAQGQPVAVLNHNRVMGYMVPAELYEAMMEQLEDIELAQLVKARAHEKGVPVKLDD
L

Download         Length: 246 bp

>AT115753 NZ_CP034338:c3883898-3883653 [Pseudomonas entomophila]
ATGCAGAACATCTTCGCCGACATCACCGTCAGCGTCTCGGAATTGAAGAAGAATCCCACGGCTGTCATGGCAGGTGCACA
GGGGCAGCCAGTGGCAGTGCTCAATCATAATCGCGTCATGGGCTACATGGTGCCCGCTGAACTCTATGAGGCGATGATGG
AGCAACTGGAAGACATCGAGCTGGCGCAATTGGTCAAGGCACGTGCGCACGAGAAGGGCGTGCCGGTGAAGCTGGATGAC
CTATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References