Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3626314..3626830 Replicon chromosome
Accession NZ_CP034337
Organism Pseudomonas entomophila strain 2014

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag EI693_RS16900 Protein ID WP_125464711.1
Coordinates 3626314..3626595 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag EI693_RS16905 Protein ID WP_125464712.1
Coordinates 3626585..3626830 (-) Length 82 a.a.

Genomic Context

EI693_RS16885EI693_RS16890EI693_RS16910EI693_RS16915EI693_RS16895EI693_RS16900EI693_RS16905EI693_RS16920EI693_RS16925
Location: 3621980..3622552 (573 bp)
Type: Others
Protein ID: WP_125464708.1
Location: 3622707..3624614 (1908 bp)
Type: Others
Protein ID: WP_125464709.1
Location: 3627039..3627500 (462 bp)
Type: Others
Protein ID: WP_189654481.1
Location: 3627621..3627944 (324 bp)
Type: Others
Protein ID: WP_125464714.1
Location: 3624737..3626074 (1338 bp)
Type: Others
Protein ID: WP_125464710.1
Location: 3626314..3626595 (282 bp)
Type: Toxin
Protein ID: WP_125464711.1
Location: 3626585..3626830 (246 bp)
Type: Antitoxin
Protein ID: WP_125464712.1
Location: 3627955..3628683 (729 bp)
Type: Others
Protein ID: WP_125464715.1
Location: 3628801..3629547 (747 bp)
Type: Others
Protein ID: WP_125464716.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
EI693_RS168853621980..3622552+573WP_125464708.1ComF family protein-
EI693_RS168903622707..3624614+1908WP_125464709.1HAD-IA family hydrolase-
EI693_RS168953624737..3626074-1338WP_125464710.1OprD family porin-
EI693_RS169003626314..3626595-282WP_125464711.1type II toxin-antitoxin system RelE/ParE family toxinToxin
EI693_RS169053626585..3626830-246WP_125464712.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
EI693_RS169103627039..3627500+462WP_189654481.1PaaI family thioesterase-
EI693_RS169153627621..3627944+324WP_125464714.1DUF2790 domain-containing protein-
EI693_RS169203627955..3628683-729WP_125464715.1hypothetical protein-
EI693_RS169253628801..3629547-747WP_125464716.1sulfite exporter TauE/SafE family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic island--3626314..365119224878


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(9-77)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10801.77 Da        Isoelectric Point: 10.9348

>T115744 WP_125464711.1 NZ_CP034337:c3626595-3626314 [Pseudomonas entomophila]
MTYKLEFLPSALKEWEKLGHTVREQAKKKLRERLVLPRVPADALRDLPNHYKIKLKSSGYRLVYRVEDQRVVVLVVAVGK
REGAAAYRSALKR

Download         Length: 282 bp

>T115744 NZ_CP034337:c3626595-3626314 [Pseudomonas entomophila]
ATGACCTATAAGCTCGAGTTTCTGCCCTCTGCGTTGAAGGAGTGGGAGAAACTTGGCCATACCGTGCGTGAGCAAGCCAA
GAAGAAACTGCGTGAGCGGCTGGTACTGCCCAGGGTGCCAGCGGACGCGCTGCGCGACTTGCCCAACCACTACAAGATCA
AACTCAAGTCCTCAGGTTATCGACTGGTCTATCGGGTAGAGGATCAGCGAGTCGTTGTGCTGGTGGTGGCGGTAGGCAAG
CGCGAAGGCGCGGCGGCCTATCGCTCTGCTCTGAAGCGCTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8907.37 Da        Isoelectric Point: 4.6982

>AT115744 WP_125464712.1 NZ_CP034337:c3626830-3626585 [Pseudomonas entomophila]
MQNIFADITVSVSELKKNPTAVMAGAQGQPVAVLNHNRVMGYMVPAELYEAMMEQLEDIELAQLVKARAHEKGVPVKLDD
L

Download         Length: 246 bp

>AT115744 NZ_CP034337:c3626830-3626585 [Pseudomonas entomophila]
ATGCAGAACATCTTCGCCGACATCACCGTCAGCGTTTCGGAATTGAAGAAGAATCCCACGGCTGTCATGGCAGGTGCACA
GGGGCAGCCAGTGGCAGTGCTCAATCATAATCGCGTCATGGGCTACATGGTGCCCGCTGAACTCTATGAGGCGATGATGG
AGCAACTGGAAGACATCGAGCTGGCGCAATTGGTCAAGGCACGTGCGCACGAGAAGGGCGTGCCGGTGAAGCTGGATGAC
CTATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References