Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4663443..4663594 | Replicon | chromosome |
| Accession | NZ_CP034336 | ||
| Organism | Enterobacter asburiae strain CAV1043 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4663478..4663581 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4663443..4663594 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EI562_RS23135 | 4659927..4660589 | - | 663 | WP_023312223.1 | exodeoxyribonuclease X | - |
| EI562_RS23140 | 4660614..4661264 | - | 651 | WP_023312222.1 | carbon-nitrogen hydrolase family protein | - |
| EI562_RS23145 | 4661375..4661605 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| EI562_RS23150 | 4661742..4662113 | + | 372 | WP_023312221.1 | CopC domain-containing protein YobA | - |
| EI562_RS23155 | 4662115..4662984 | + | 870 | WP_023312220.1 | copper homeostasis membrane protein CopD | - |
| EI562_RS23160 | 4663001..4663339 | + | 339 | WP_023312219.1 | YebY family protein | - |
| - | 4663443..4663594 | - | 152 | - | - | Antitoxin |
| - | 4663478..4663581 | + | 104 | - | - | Toxin |
| EI562_RS23165 | 4663747..4664688 | - | 942 | WP_023312218.1 | VirK/YbjX family protein | - |
| EI562_RS23170 | 4664854..4665051 | + | 198 | Protein_4448 | metallophosphoesterase | - |
| EI562_RS23175 | 4665067..4665764 | - | 698 | Protein_4449 | IS1 family transposase | - |
| EI562_RS23180 | 4665816..4666274 | + | 459 | Protein_4450 | serine/threonine-protein phosphatase | - |
| EI562_RS23185 | 4666309..4666548 | - | 240 | WP_008500472.1 | YebV family protein | - |
| EI562_RS23190 | 4666655..4668103 | - | 1449 | WP_202816544.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4642636..4681894 | 39258 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T115734 NZ_CP034336:4663478-4663581 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT115734 NZ_CP034336:c4663594-4663443 [Enterobacter asburiae]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
