Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966328..1966473 | Replicon | chromosome |
| Accession | NZ_CP034281 | ||
| Organism | Klebsiella pneumoniae strain I72 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966364..1966466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966328..1966473 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EI552_RS09860 | 1961458..1963518 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| EI552_RS09865 | 1963522..1964181 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| EI552_RS09870 | 1964260..1964490 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EI552_RS09875 | 1964603..1964977 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EI552_RS09880 | 1964981..1965850 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| EI552_RS09885 | 1965867..1966205 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1966328..1966473 | - | 146 | - | - | Antitoxin |
| - | 1966364..1966466 | + | 103 | - | - | Toxin |
| EI552_RS29175 | 1966841..1966984 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EI552_RS09895 | 1967089..1968057 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EI552_RS09900 | 1968214..1968867 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| EI552_RS09905 | 1968864..1969055 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EI552_RS09910 | 1969153..1969392 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EI552_RS09915 | 1969508..1970941 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115663 NZ_CP034281:1966364-1966466 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT115663 NZ_CP034281:c1966473-1966328 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
