Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1940416..1940561 | Replicon | chromosome |
| Accession | NZ_CP034249 | ||
| Organism | Klebsiella pneumoniae strain KP18-29 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1940452..1940554 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1940416..1940561 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EIL78_RS09695 | 1935549..1937609 | + | 2061 | WP_019705169.1 | oligopeptidase B | - |
| EIL78_RS09700 | 1937613..1938270 | - | 658 | Protein_1863 | exodeoxyribonuclease X | - |
| EIL78_RS09705 | 1938349..1938579 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EIL78_RS09710 | 1938692..1939066 | + | 375 | WP_014343244.1 | CopC domain-containing protein YobA | - |
| EIL78_RS09715 | 1939070..1939939 | + | 870 | WP_014343243.1 | copper homeostasis membrane protein CopD | - |
| EIL78_RS09720 | 1939956..1940294 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1940416..1940561 | - | 146 | - | - | Antitoxin |
| - | 1940452..1940554 | + | 103 | - | - | Toxin |
| EIL78_RS27245 | 1940929..1941072 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EIL78_RS09730 | 1941177..1942145 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EIL78_RS09735 | 1942302..1942955 | + | 654 | WP_014343242.1 | protein-serine/threonine phosphatase | - |
| EIL78_RS09740 | 1942952..1943143 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EIL78_RS09745 | 1943241..1943480 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EIL78_RS09750 | 1943596..1945029 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115605 NZ_CP034249:1940452-1940554 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT115605 NZ_CP034249:c1940561-1940416 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
