Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YafQ-RelB |
Location | 605437..605977 | Replicon | chromosome |
Accession | NZ_CP034241 | ||
Organism | Aliivibrio salmonicida strain VS224 |
Toxin (Protein)
Gene name | relE | Uniprot ID | B6ERG8 |
Locus tag | EIJ81_RS20275 | Protein ID | WP_012551870.1 |
Coordinates | 605437..605706 (-) | Length | 90 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | B6ERG9 |
Locus tag | EIJ81_RS20280 | Protein ID | WP_012551871.1 |
Coordinates | 605699..605977 (-) | Length | 93 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EIJ81_RS20230 | 600599..600868 | + | 270 | WP_044583569.1 | DUF1778 domain-containing protein | - |
EIJ81_RS20235 | 600865..601395 | + | 531 | WP_012551863.1 | GNAT family N-acetyltransferase | - |
EIJ81_RS20240 | 601404..602099 | + | 696 | WP_012551864.1 | hypothetical protein | - |
EIJ81_RS20245 | 602287..602541 | + | 255 | WP_012551865.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
EIJ81_RS20250 | 602532..602846 | + | 315 | WP_012551866.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
EIJ81_RS20255 | 603090..603440 | + | 351 | WP_012551867.1 | cupin domain-containing protein | - |
EIJ81_RS20260 | 603680..604150 | + | 471 | WP_012551868.1 | hypothetical protein | - |
EIJ81_RS20265 | 604143..604745 | + | 603 | WP_012551869.1 | putative adenosine monophosphate-protein transferase Fic | - |
EIJ81_RS20275 | 605437..605706 | - | 270 | WP_012551870.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
EIJ81_RS20280 | 605699..605977 | - | 279 | WP_012551871.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
EIJ81_RS20285 | 606204..607796 | - | 1593 | WP_012551872.1 | RNA-directed DNA polymerase | - |
EIJ81_RS20295 | 608365..608559 | - | 195 | WP_012551874.1 | hypothetical protein | - |
EIJ81_RS23215 | 608725..608898 | + | 174 | WP_012551875.1 | hypothetical protein | - |
EIJ81_RS20300 | 609053..609937 | + | 885 | WP_012551876.1 | GIY-YIG nuclease family protein | - |
EIJ81_RS20310 | 610713..610964 | + | 252 | WP_012551877.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integron | - | - | 593550..615412 | 21862 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 a.a. Molecular weight: 10355.92 Da Isoelectric Point: 8.9467
>T115589 WP_012551870.1 NZ_CP034241:c605706-605437 [Aliivibrio salmonicida]
MYNLEYSTQFKKDFKKITKMPISNIIEVGNIISKLQRNETLDPKNVDHSLTGNWSGFRDCHIKPDLVLIYRIFDGQLQLA
RIGSHSDLF
MYNLEYSTQFKKDFKKITKMPISNIIEVGNIISKLQRNETLDPKNVDHSLTGNWSGFRDCHIKPDLVLIYRIFDGQLQLA
RIGSHSDLF
Download Length: 270 bp
>T115589 NZ_CP034241:c605706-605437 [Aliivibrio salmonicida]
ATGTATAACCTAGAATACTCCACGCAATTTAAAAAGGATTTTAAGAAGATAACTAAAATGCCAATCTCCAATATCATCGA
AGTTGGCAATATCATCTCAAAATTACAAAGAAATGAAACATTAGACCCTAAAAATGTAGATCATTCTTTAACGGGAAATT
GGAGTGGTTTTCGCGACTGTCATATAAAACCAGACTTAGTTCTCATTTACCGTATATTTGATGGGCAACTACAACTAGCA
AGAATTGGGTCACATAGCGATCTATTTTGA
ATGTATAACCTAGAATACTCCACGCAATTTAAAAAGGATTTTAAGAAGATAACTAAAATGCCAATCTCCAATATCATCGA
AGTTGGCAATATCATCTCAAAATTACAAAGAAATGAAACATTAGACCCTAAAAATGTAGATCATTCTTTAACGGGAAATT
GGAGTGGTTTTCGCGACTGTCATATAAAACCAGACTTAGTTCTCATTTACCGTATATTTGATGGGCAACTACAACTAGCA
AGAATTGGGTCACATAGCGATCTATTTTGA
Antitoxin
Download Length: 93 a.a. Molecular weight: 10029.47 Da Isoelectric Point: 6.2167
>AT115589 WP_012551871.1 NZ_CP034241:c605977-605699 [Aliivibrio salmonicida]
MRNEMLSTRIDHDTKLAFTSICGEVGLSTSQAIKLFAKAVINHGGIPFDLRVPQPNEVSAAAMKELVENKGHKANSIDEM
FSELTEGKVTNV
MRNEMLSTRIDHDTKLAFTSICGEVGLSTSQAIKLFAKAVINHGGIPFDLRVPQPNEVSAAAMKELVENKGHKANSIDEM
FSELTEGKVTNV
Download Length: 279 bp
>AT115589 NZ_CP034241:c605977-605699 [Aliivibrio salmonicida]
ATGAGAAATGAAATGCTAAGCACCCGCATAGACCATGATACCAAACTTGCTTTCACTAGCATCTGCGGTGAAGTTGGCCT
AAGCACATCACAAGCAATTAAACTATTTGCTAAAGCTGTCATTAACCATGGTGGTATTCCATTTGATCTACGAGTTCCGC
AGCCAAATGAAGTTTCTGCTGCTGCAATGAAAGAACTTGTTGAAAATAAAGGACATAAAGCCAACTCTATAGATGAGATG
TTTTCTGAGCTCACTGAAGGCAAAGTGACAAATGTATAA
ATGAGAAATGAAATGCTAAGCACCCGCATAGACCATGATACCAAACTTGCTTTCACTAGCATCTGCGGTGAAGTTGGCCT
AAGCACATCACAAGCAATTAAACTATTTGCTAAAGCTGTCATTAACCATGGTGGTATTCCATTTGATCTACGAGTTCCGC
AGCCAAATGAAGTTTCTGCTGCTGCAATGAAAGAACTTGTTGAAAATAAAGGACATAAAGCCAACTCTATAGATGAGATG
TTTTCTGAGCTCACTGAAGGCAAAGTGACAAATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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