Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 4643180..4644621 Replicon chromosome
Accession NZ_CP034237
Organism Pectobacterium carotovorum subsp. carotovorum strain JR1.1

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag EH204_RS20740 Protein ID WP_161509959.1
Coordinates 4643180..4644067 (-) Length 296 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag EH204_RS20745 Protein ID WP_107332130.1
Coordinates 4644097..4644621 (-) Length 175 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EH204_RS20720 4639173..4639994 + 822 WP_161509956.1 M55 family metallopeptidase -
EH204_RS20725 4640053..4641000 + 948 WP_161509957.1 isoaspartyl peptidase/L-asparaginase -
EH204_RS20730 4641205..4642113 + 909 WP_161509958.1 LysR family transcriptional regulator -
EH204_RS20735 4642212..4643075 + 864 WP_039474565.1 YicC family protein -
EH204_RS20740 4643180..4644067 - 888 WP_161509959.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
EH204_RS20745 4644097..4644621 - 525 WP_107332130.1 hypothetical protein Antitoxin
EH204_RS20750 4644941..4647421 - 2481 WP_161509960.1 restriction endonuclease-like protein -
EH204_RS20755 4647440..4649284 - 1845 WP_161509961.1 DUF3578 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(39-265)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 296 a.a.        Molecular weight: 34007.92 Da        Isoelectric Point: 5.7070

>T115578 WP_161509959.1 NZ_CP034237:c4644067-4643180 [Pectobacterium carotovorum subsp. carotovorum]
MLKQQIRQIIQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFQPSAFE
GLESEIQTYIQNKYETEVWVNKPSGAQQGDTVSWKISIVKEANRPDLPRQKMHIDVCAIPSFDIEKRPLINHYDIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGIDLSKTLVEKKLTARQKQTEDFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKQIKERTLDNPEYWAYVQGEVHTIASELLNDGTPKNPFDMG

Download         Length: 888 bp

>T115578 NZ_CP034237:c4644067-4643180 [Pectobacterium carotovorum subsp. carotovorum]
ATGCTGAAGCAACAAATTCGCCAAATCATCCAGTCAAACCCTGACTATGCCGCAGTAACACCCGTCATAGAAAAAGAGAT
CTTGCATCATGACATTATCGATGTGCTGATCAAACAGGGCGTCATGCAGCGGTTAACGTTTATTGGCGGCACCTCATTAC
GAATGTGTTACAACAGCAGCAGGCTATCAGAAGATCTTGATTTCAATGGTGGTCATGATTTCCAGCCCTCAGCGTTTGAG
GGGCTGGAGTCCGAAATTCAAACCTATATTCAGAACAAGTATGAAACCGAAGTTTGGGTAAACAAACCTTCTGGCGCGCA
GCAAGGGGATACCGTTTCTTGGAAAATTAGTATCGTAAAAGAAGCTAATCGTCCTGATTTGCCACGGCAAAAAATGCATA
TTGACGTCTGTGCTATTCCGTCATTTGATATTGAAAAGCGCCCGCTAATCAATCATTACGACATCGTTGTACCGACTGAA
GGGATCTTGGTTCCGGTACAGTCGTTACAAGAAACATTGGCCGATAAGTTGATCGCGTTAGCGTATCGGGCAAGACGTAT
TAAACCTCGTGATATCTGGGATATCGTTTGGATTAAGCAGCGCGGTATTGATTTATCCAAGACACTGGTTGAAAAGAAGC
TCACCGCCAGACAGAAGCAAACAGAAGACTTTCGACAGGCGCTGTCTATTCAGTTAGCCAAGCTGATGTCGGAAGATGAA
GTCCGTGACGACTTCAATATGGAAATGAGCCGCTTTATTCCTAAGCAAATTAAAGAGAGAACCCTCGATAATCCTGAATA
TTGGGCTTATGTTCAGGGCGAGGTACATACCATCGCGTCTGAGTTACTGAATGACGGAACACCAAAAAATCCATTTGATA
TGGGTTAG

Antitoxin


Download         Length: 175 a.a.        Molecular weight: 19352.48 Da        Isoelectric Point: 9.0504

>AT115578 WP_107332130.1 NZ_CP034237:c4644621-4644097 [Pectobacterium carotovorum subsp. carotovorum]
MAKSDELLNALAKSVNAGGGIHSVAELAFMQGVPCDSAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES

Download         Length: 525 bp

>AT115578 NZ_CP034237:c4644621-4644097 [Pectobacterium carotovorum subsp. carotovorum]
ATGGCTAAATCTGATGAGCTATTAAACGCGTTGGCTAAATCAGTGAACGCTGGCGGTGGCATTCACAGTGTAGCAGAGCT
GGCTTTTATGCAGGGTGTGCCTTGTGACTCAGCCTTTAGAAAATTCCTGGCAGATTGCGTAAAGAAGGGGTTGCTAAGAC
GAGTGGTGAAAGGCTTCTATGAAAGTGTTATTACACCACCTGAGCCTGAGACTGCCATTTATAAAATCATCAAAAAGTTG
CGCAGTGGCGTATTGAACTACATCAGTTTAGAAAGTCAGCTCAGTCATACCGGTGATATTTCACAAGTTGTGATGGGTAG
AGTCACGGTGGTGACTAAAGGTCGAAGTGGTTGTTTTGATACGCCTTATGGCGTGATCGAGTTTACCCATACTAAAAAGC
CAGTCGAGCAAATTGCACCTAATTTGTACTATGACCCTGACATCAAAATGTATCGCGCATACAAGGAACAAGCGATTGCA
GATCTAAAGCACTGCCAACGCAATCTACATATGTTGGAGAGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References