Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1991592..1991758 | Replicon | chromosome |
| Accession | NZ_CP034225 | ||
| Organism | Kosakonia sp. CCTCC M2018092 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1991652..1991754 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1991592..1991758 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EH164_RS09495 | 1986801..1988855 | + | 2055 | WP_124968054.1 | oligopeptidase B | - |
| EH164_RS09500 | 1988856..1989518 | - | 663 | WP_023480129.1 | exodeoxyribonuclease X | - |
| EH164_RS09505 | 1989530..1989760 | - | 231 | WP_034813210.1 | DNA polymerase III subunit theta | - |
| EH164_RS09510 | 1989897..1990271 | + | 375 | WP_124968055.1 | CopC domain-containing protein YobA | - |
| EH164_RS09515 | 1990273..1991142 | + | 870 | WP_124968056.1 | copper homeostasis membrane protein CopD | - |
| EH164_RS09520 | 1991161..1991505 | + | 345 | WP_124968057.1 | YebY family protein | - |
| - | 1991592..1991758 | - | 167 | - | - | Antitoxin |
| - | 1991652..1991754 | + | 103 | - | - | Toxin |
| EH164_RS22580 | 1992155..1992715 | + | 561 | WP_164483611.1 | peptidoglycan-binding domain-containing protein | - |
| EH164_RS09535 | 1992669..1993004 | + | 336 | WP_124971372.1 | hypothetical protein | - |
| EH164_RS09540 | 1993320..1993964 | + | 645 | WP_124968059.1 | protein-serine/threonine phosphatase | - |
| EH164_RS09545 | 1993965..1994156 | - | 192 | WP_023480173.1 | YebW family protein | - |
| EH164_RS09550 | 1994262..1994501 | - | 240 | WP_023480127.1 | YebV family protein | - |
| EH164_RS09555 | 1994616..1996055 | - | 1440 | WP_164483612.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115540 NZ_CP034225:1991652-1991754 [Kosakonia sp. CCTCC M2018092]
GCAAGGCGACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCGACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 167 bp
>AT115540 NZ_CP034225:c1991758-1991592 [Kosakonia sp. CCTCC M2018092]
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTTAGTCGCCTTGCATCTTAAGAATAGATGACGACACCAGCTTTTCCAGTCCGCGACAAATGTGGTC
AGAAAAA
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTTAGTCGCCTTGCATCTTAAGAATAGATGACGACACCAGCTTTTCCAGTCCGCGACAAATGTGGTC
AGAAAAA
