Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 435682..435914 | Replicon | chromosome |
| Accession | NZ_CP034213 | ||
| Organism | Escherichia albertii strain NCTC 9362 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 435809..435912 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 435682..435914 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSB70_RS02210 | 430994..432235 | + | 1242 | Protein_432 | prolyl oligopeptidase family serine peptidase | - |
| DSB70_RS02215 | 432232..432894 | - | 663 | WP_025238865.1 | exodeoxyribonuclease X | - |
| DSB70_RS02220 | 432918..433574 | - | 657 | WP_125059247.1 | carbon-nitrogen hydrolase family protein YobB | - |
| DSB70_RS02225 | 433676..433906 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| DSB70_RS02230 | 434045..434422 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| DSB70_RS02235 | 434426..435298 | + | 873 | WP_059244199.1 | copper homeostasis membrane protein CopD | - |
| DSB70_RS02240 | 435311..435652 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 435682..435914 | - | 233 | - | - | Antitoxin |
| - | 435809..435912 | + | 104 | - | - | Toxin |
| DSB70_RS02245 | 436534..437112 | + | 579 | WP_164474073.1 | bfpT-regulated chaperone | - |
| DSB70_RS23655 | 437569..437733 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| DSB70_RS02255 | 438699..439011 | + | 313 | Protein_441 | potassium transporter TrkG | - |
| DSB70_RS23660 | 439623..439826 | + | 204 | WP_164474050.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 415144..457547 | 42403 | |
| - | flank | IS/Tn | - | - | 439027..439530 | 503 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T115509 NZ_CP034213:435809-435912 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT115509 NZ_CP034213:c435914-435682 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
