Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | paaR-paaA-parE/- |
| Location | 705132..705603 | Replicon | chromosome |
| Accession | NZ_CP034212 | ||
| Organism | Escherichia albertii strain 2010C-3449 | ||
Toxin (Protein)
| Gene name | parE_1 | Uniprot ID | A0A0D7C2L1 |
| Locus tag | CCF17_RS03785 | Protein ID | WP_001303511.1 |
| Coordinates | 705325..705603 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | paaA | Uniprot ID | Q8XAD5 |
| Locus tag | CCF17_RS03780 | Protein ID | WP_001302048.1 |
| Coordinates | 705132..705323 (+) | Length | 64 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCF17_RS03735 (700194) | 700194..700691 | - | 498 | Protein_729 | ead/Ea22-like family protein | - |
| CCF17_RS03740 (700688) | 700688..700984 | - | 297 | WP_151401098.1 | DUF4406 domain-containing protein | - |
| CCF17_RS03745 (700981) | 700981..701373 | - | 393 | WP_151401099.1 | DUF977 family protein | - |
| CCF17_RS03750 (701389) | 701389..702159 | - | 771 | WP_151401100.1 | DUF1627 domain-containing protein | - |
| CCF17_RS03755 (702185) | 702185..702926 | - | 742 | Protein_733 | ATP-binding protein | - |
| CCF17_RS03760 (702933) | 702933..703895 | - | 963 | WP_151401101.1 | helix-turn-helix domain-containing protein | - |
| CCF17_RS03765 (703918) | 703918..704343 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| CCF17_RS03770 (704340) | 704340..704642 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| CCF17_RS03775 (704740) | 704740..705111 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| CCF17_RS03780 (705132) | 705132..705323 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin |
| CCF17_RS03785 (705325) | 705325..705603 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| CCF17_RS25460 (706034) | 706034..706192 | - | 159 | WP_241201790.1 | hypothetical protein | - |
| CCF17_RS03795 (706242) | 706242..706939 | + | 698 | WP_225520032.1 | IS1-like element IS1A family transposase | - |
| CCF17_RS25465 (706943) | 706943..707011 | - | 69 | Protein_742 | hypothetical protein | - |
| CCF17_RS03800 (707104) | 707104..707322 | + | 219 | WP_032208669.1 | protein YdfC | - |
| CCF17_RS03805 (707326) | 707326..707490 | - | 165 | WP_001331716.1 | hypothetical protein | - |
| CCF17_RS03815 (707943) | 707943..708640 | + | 698 | WP_225520032.1 | IS1-like element IS1A family transposase | - |
| CCF17_RS03820 (708668) | 708668..708856 | + | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| CCF17_RS03825 (708853) | 708853..709041 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10661.25 Da Isoelectric Point: 5.5647
>T115485 WP_001303511.1 NZ_CP034212:705325-705603 [Escherichia albertii]
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
Download Length: 279 bp
>T115485 NZ_CP034212:705325-705603 [Escherichia albertii]
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA
Antitoxin
Download Length: 64 a.a. Molecular weight: 7463.47 Da Isoelectric Point: 8.6828
>AT115485 WP_001302048.1 NZ_CP034212:705132-705323 [Escherichia albertii]
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
Download Length: 192 bp
>AT115485 NZ_CP034212:705132-705323 [Escherichia albertii]
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|