Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 443631..443863 | Replicon | chromosome |
| Accession | NZ_CP034166 | ||
| Organism | Escherichia albertii strain 2014C-4015 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 443633..443735 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 443631..443863 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYR02_RS03105 | 440035..441492 | - | 1458 | WP_124783289.1 | Trk system potassium transporter TrkG | - |
| AYR02_RS24800 | 441758..441907 | + | 150 | WP_002462310.1 | hypothetical protein | - |
| - | 443631..443863 | + | 233 | - | - | Antitoxin |
| - | 443633..443735 | - | 103 | - | - | Toxin |
| AYR02_RS03120 | 443893..444234 | - | 342 | WP_000976487.1 | YebY family protein | - |
| AYR02_RS03125 | 444247..445119 | - | 873 | WP_059220009.1 | copper homeostasis membrane protein CopD | - |
| AYR02_RS03130 | 445123..445500 | - | 378 | WP_059278247.1 | CopC domain-containing protein YobA | - |
| AYR02_RS03135 | 445639..445869 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| AYR02_RS03140 | 446035..446247 | + | 213 | Protein_417 | carbon-nitrogen hydrolase family protein | - |
| AYR02_RS03145 | 446271..446933 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | espJ | 435319..444234 | 8915 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115416 NZ_CP034166:c443735-443633 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT115416 NZ_CP034166:443631-443863 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
