Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2042040..2042187 | Replicon | chromosome |
| Accession | NZ_CP034136 | ||
| Organism | Klebsiella quasipneumoniae subsp. similipneumoniae strain G747 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2042081..2042183 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2042040..2042187 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BME36_RS10435 | 2037175..2039235 | + | 2061 | WP_032456310.1 | oligopeptidase B | - |
| BME36_RS10440 | 2039239..2039898 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| BME36_RS10445 | 2039977..2040207 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BME36_RS10450 | 2040320..2040694 | + | 375 | WP_064794753.1 | CopC domain-containing protein YobA | - |
| BME36_RS10455 | 2040698..2041567 | + | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| BME36_RS10460 | 2041584..2041922 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2042040..2042187 | - | 148 | - | - | Antitoxin |
| - | 2042081..2042183 | + | 103 | - | - | Toxin |
| BME36_RS30315 | 2042571..2042714 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| BME36_RS10470 | 2042818..2043786 | - | 969 | WP_117124423.1 | VirK/YbjX family protein | - |
| BME36_RS10475 | 2043943..2044596 | + | 654 | WP_023318613.1 | protein-serine/threonine phosphatase | - |
| BME36_RS10480 | 2044593..2044784 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BME36_RS10485 | 2044882..2045121 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BME36_RS10490 | 2045238..2046671 | - | 1434 | WP_065802960.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115348 NZ_CP034136:2042081-2042183 [Klebsiella quasipneumoniae subsp. similipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT115348 NZ_CP034136:c2042187-2042040 [Klebsiella quasipneumoniae subsp. similipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
