Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2097264..2097411 | Replicon | chromosome |
| Accession | NZ_CP034129 | ||
| Organism | Klebsiella quasipneumoniae strain G4584 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2097305..2097407 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2097264..2097411 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BME54_RS10820 | 2092399..2094459 | + | 2061 | WP_032456310.1 | oligopeptidase B | - |
| BME54_RS10825 | 2094463..2095122 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| BME54_RS10830 | 2095201..2095431 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BME54_RS10835 | 2095544..2095918 | + | 375 | WP_064794753.1 | CopC domain-containing protein YobA | - |
| BME54_RS10840 | 2095922..2096791 | + | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| BME54_RS10845 | 2096808..2097146 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2097264..2097411 | - | 148 | - | - | Antitoxin |
| - | 2097305..2097407 | + | 103 | - | - | Toxin |
| BME54_RS30910 | 2097795..2097938 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| BME54_RS10855 | 2098042..2099010 | - | 969 | WP_117124423.1 | VirK/YbjX family protein | - |
| BME54_RS10860 | 2099167..2099820 | + | 654 | WP_023318613.1 | protein-serine/threonine phosphatase | - |
| BME54_RS10865 | 2099817..2100008 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BME54_RS10870 | 2100106..2100345 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BME54_RS10875 | 2100462..2101895 | - | 1434 | WP_065802960.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115331 NZ_CP034129:2097305-2097407 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT115331 NZ_CP034129:c2097411-2097264 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
