Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2077841..2077986 | Replicon | chromosome |
| Accession | NZ_CP034082 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain R210-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2077877..2077979 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2077841..2077986 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHV09_RS10250 | 2072971..2075031 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| EHV09_RS10255 | 2075035..2075694 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| EHV09_RS10260 | 2075773..2076003 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EHV09_RS10265 | 2076116..2076490 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EHV09_RS10270 | 2076494..2077363 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| EHV09_RS10275 | 2077380..2077718 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2077841..2077986 | - | 146 | - | - | Antitoxin |
| - | 2077877..2077979 | + | 103 | - | - | Toxin |
| EHV09_RS30135 | 2078354..2078497 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EHV09_RS10285 | 2078602..2079570 | - | 969 | WP_164483505.1 | VirK/YbjX family protein | - |
| EHV09_RS10290 | 2079727..2080380 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| EHV09_RS10295 | 2080377..2080568 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EHV09_RS10300 | 2080666..2080905 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EHV09_RS10305 | 2081021..2082454 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115164 NZ_CP034082:2077877-2077979 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT115164 NZ_CP034082:c2077986-2077841 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
