Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relE-parD/RelE(toxin) |
| Location | 5411726..5412297 | Replicon | chromosome |
| Accession | NZ_CP033966 | ||
| Organism | Pigmentiphaga sp. H8 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | EGT29_RS25540 | Protein ID | WP_202865569.1 |
| Coordinates | 5412010..5412297 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | - |
| Locus tag | EGT29_RS25535 | Protein ID | WP_124691626.1 |
| Coordinates | 5411726..5412013 (+) | Length | 96 a.a. |
Genomic Context
Location: 5407953..5408768 (816 bp)
Type: Others
Protein ID: WP_124691621.1
Type: Others
Protein ID: WP_124691621.1
Location: 5408777..5409148 (372 bp)
Type: Others
Protein ID: WP_124691622.1
Type: Others
Protein ID: WP_124691622.1
Location: 5409150..5410124 (975 bp)
Type: Others
Protein ID: WP_124691623.1
Type: Others
Protein ID: WP_124691623.1
Location: 5410121..5410876 (756 bp)
Type: Others
Protein ID: WP_124691624.1
Type: Others
Protein ID: WP_124691624.1
Location: 5410873..5411640 (768 bp)
Type: Others
Protein ID: WP_124691625.1
Type: Others
Protein ID: WP_124691625.1
Location: 5411726..5412013 (288 bp)
Type: Antitoxin
Protein ID: WP_124691626.1
Type: Antitoxin
Protein ID: WP_124691626.1
Location: 5412010..5412297 (288 bp)
Type: Toxin
Protein ID: WP_202865569.1
Type: Toxin
Protein ID: WP_202865569.1
Location: 5412303..5413295 (993 bp)
Type: Others
Protein ID: WP_124691627.1
Type: Others
Protein ID: WP_124691627.1
Location: 5413325..5414221 (897 bp)
Type: Others
Protein ID: WP_124691628.1
Type: Others
Protein ID: WP_124691628.1
Location: 5414218..5415195 (978 bp)
Type: Others
Protein ID: WP_124691629.1
Type: Others
Protein ID: WP_124691629.1
Location: 5415210..5415800 (591 bp)
Type: Others
Protein ID: WP_124691630.1
Type: Others
Protein ID: WP_124691630.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGT29_RS25510 | 5407953..5408768 | + | 816 | WP_124691621.1 | SDR family oxidoreductase | - |
| EGT29_RS25515 | 5408777..5409148 | + | 372 | WP_124691622.1 | dihydroneopterin aldolase | - |
| EGT29_RS25520 | 5409150..5410124 | + | 975 | WP_124691623.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| EGT29_RS25525 | 5410121..5410876 | + | 756 | WP_124691624.1 | ABC transporter ATP-binding protein | - |
| EGT29_RS25530 | 5410873..5411640 | + | 768 | WP_124691625.1 | ABC transporter permease | - |
| EGT29_RS25535 | 5411726..5412013 | + | 288 | WP_124691626.1 | hypothetical protein | Antitoxin |
| EGT29_RS25540 | 5412010..5412297 | + | 288 | WP_202865569.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| EGT29_RS25545 | 5412303..5413295 | + | 993 | WP_124691627.1 | ABC transporter substrate-binding protein | - |
| EGT29_RS25550 | 5413325..5414221 | + | 897 | WP_124691628.1 | LysR family transcriptional regulator | - |
| EGT29_RS25555 | 5414218..5415195 | - | 978 | WP_124691629.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| EGT29_RS25560 | 5415210..5415800 | - | 591 | WP_124691630.1 | 2-hydroxychromene-2-carboxylate isomerase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11052.61 Da Isoelectric Point: 5.5803
>T114747 WP_202865569.1 NZ_CP033966:5412010-5412297 [Pigmentiphaga sp. H8]
MIQLYWTFEAIGDRESIYDYIETDNPVAALALDELFEEKSGRLIDHPDMGRPGRVAGTRELVVHRHYVLVYDMTGEKIRV
LRVLHAARQWPPSKE
MIQLYWTFEAIGDRESIYDYIETDNPVAALALDELFEEKSGRLIDHPDMGRPGRVAGTRELVVHRHYVLVYDMTGEKIRV
LRVLHAARQWPPSKE
Download Length: 288 bp
>T114747 NZ_CP033966:5412010-5412297 [Pigmentiphaga sp. H8]
ATGATCCAACTGTATTGGACGTTCGAGGCCATTGGCGACCGTGAATCGATCTATGACTACATCGAGACCGACAACCCTGT
CGCCGCACTCGCCCTCGACGAACTGTTTGAAGAAAAATCCGGCCGCCTGATCGACCACCCGGACATGGGCCGGCCTGGCC
GTGTCGCCGGTACCCGGGAACTCGTCGTACACAGGCACTATGTGCTGGTTTATGACATGACCGGCGAGAAAATACGTGTA
CTGCGTGTACTGCACGCAGCCCGGCAATGGCCACCATCCAAGGAGTGA
ATGATCCAACTGTATTGGACGTTCGAGGCCATTGGCGACCGTGAATCGATCTATGACTACATCGAGACCGACAACCCTGT
CGCCGCACTCGCCCTCGACGAACTGTTTGAAGAAAAATCCGGCCGCCTGATCGACCACCCGGACATGGGCCGGCCTGGCC
GTGTCGCCGGTACCCGGGAACTCGTCGTACACAGGCACTATGTGCTGGTTTATGACATGACCGGCGAGAAAATACGTGTA
CTGCGTGTACTGCACGCAGCCCGGCAATGGCCACCATCCAAGGAGTGA
Antitoxin
Download Length: 96 a.a. Molecular weight: 10815.99 Da Isoelectric Point: 10.4219
>AT114747 WP_124691626.1 NZ_CP033966:5411726-5412013 [Pigmentiphaga sp. H8]
MSEATFTFRVDESLKTAFATAAKARDRTGAQLLRDFMREFVQQQHEAAEHDTWFRREVKAGQDSANGGRLAPAAEVETRF
AARRAATRRRLEQSE
MSEATFTFRVDESLKTAFATAAKARDRTGAQLLRDFMREFVQQQHEAAEHDTWFRREVKAGQDSANGGRLAPAAEVETRF
AARRAATRRRLEQSE
Download Length: 288 bp
>AT114747 NZ_CP033966:5411726-5412013 [Pigmentiphaga sp. H8]
ATGAGCGAGGCAACCTTTACATTCAGGGTCGATGAGTCGCTGAAGACCGCTTTCGCCACCGCGGCCAAGGCTCGCGACCG
GACCGGCGCCCAACTTCTACGCGACTTCATGCGCGAATTCGTGCAGCAACAACATGAAGCGGCCGAACATGACACCTGGT
TCCGCCGCGAAGTGAAAGCCGGGCAGGACTCCGCGAATGGCGGCCGTCTGGCACCGGCCGCCGAGGTCGAAACCCGATTC
GCAGCCCGTCGGGCTGCCACGCGCCGCCGGCTTGAACAGTCAGAATGA
ATGAGCGAGGCAACCTTTACATTCAGGGTCGATGAGTCGCTGAAGACCGCTTTCGCCACCGCGGCCAAGGCTCGCGACCG
GACCGGCGCCCAACTTCTACGCGACTTCATGCGCGAATTCGTGCAGCAACAACATGAAGCGGCCGAACATGACACCTGGT
TCCGCCGCGAAGTGAAAGCCGGGCAGGACTCCGCGAATGGCGGCCGTCTGGCACCGGCCGCCGAGGTCGAAACCCGATTC
GCAGCCCGTCGGGCTGCCACGCGCCGCCGGCTTGAACAGTCAGAATGA