Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5060805..5061076 | Replicon | chromosome |
| Accession | NZ_CP033884 | ||
| Organism | Escherichia coli strain 50579417 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5060843..5060946 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5060805..5061076 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGM66_RS27100 | 5057962..5059401 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EGM66_RS27105 | 5059519..5059755 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EGM66_RS27110 | 5059860..5060051 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EGM66_RS27115 | 5060052..5060708 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 5060805..5061076 | + | 272 | - | - | Antitoxin |
| - | 5060843..5060946 | - | 104 | - | - | Toxin |
| EGM66_RS27120 | 5061104..5061445 | - | 342 | WP_001520705.1 | YebY family protein | - |
| EGM66_RS27125 | 5061458..5062330 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| EGM66_RS27130 | 5062334..5062708 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| EGM66_RS27135 | 5062847..5063077 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EGM66_RS27140 | 5063179..5063835 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| EGM66_RS27145 | 5063859..5064521 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T114599 NZ_CP033884:c5060946-5060843 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT114599 NZ_CP033884:5060805-5061076 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
