Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4398496..4398767 | Replicon | chromosome |
| Accession | NZ_CP033850 | ||
| Organism | Escherichia coli strain FDAARGOS_497 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4398534..4398637 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4398496..4398767 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGY17_RS23335 | 4395653..4397092 | + | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EGY17_RS23340 | 4397210..4397446 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EGY17_RS23345 | 4397551..4397742 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EGY17_RS23350 | 4397743..4398399 | - | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| - | 4398496..4398767 | + | 272 | - | - | Antitoxin |
| - | 4398534..4398637 | - | 104 | - | - | Toxin |
| EGY17_RS23355 | 4398795..4399136 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EGY17_RS23360 | 4399149..4400021 | - | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| EGY17_RS23365 | 4400025..4400399 | - | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| EGY17_RS23370 | 4400538..4400768 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EGY17_RS23375 | 4400870..4401526 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| EGY17_RS23380 | 4401550..4402212 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T114515 NZ_CP033850:c4398637-4398534 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT114515 NZ_CP033850:4398496-4398767 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
