Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1310663..1310808 | Replicon | chromosome |
| Accession | NZ_CP033844 | ||
| Organism | Klebsiella oxytoca strain FDAARGOS_500 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1310670..1310773 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1310663..1310808 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGY21_RS06265 | 1305937..1306455 | + | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
| EGY21_RS06270 | 1306473..1307237 | + | 765 | WP_004103339.1 | molecular chaperone | - |
| EGY21_RS06275 | 1307240..1309573 | + | 2334 | WP_123829747.1 | fimbrial biogenesis outer membrane usher protein | - |
| EGY21_RS06280 | 1309585..1310544 | + | 960 | WP_123829748.1 | spore coat U domain-containing protein | - |
| - | 1310663..1310808 | + | 146 | - | - | Antitoxin |
| - | 1310670..1310773 | - | 104 | - | - | Toxin |
| EGY21_RS06285 | 1310930..1311268 | - | 339 | WP_049106124.1 | YebY family protein | - |
| EGY21_RS06290 | 1311285..1312154 | - | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| EGY21_RS06295 | 1312159..1312533 | - | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| EGY21_RS06300 | 1312669..1312899 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| EGY21_RS06305 | 1312978..1313637 | + | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| EGY21_RS06310 | 1313644..1315704 | - | 2061 | WP_016808307.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T114467 NZ_CP033844:c1310773-1310670 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT114467 NZ_CP033844:1310663-1310808 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
