Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5286788..5286956 | Replicon | chromosome |
| Accession | NZ_CP033824 | ||
| Organism | Klebsiella sp. FDAARGOS_511 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5286846..5286949 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5286788..5286956 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGY08_RS26520 | 5281914..5283974 | + | 2061 | WP_032741886.1 | oligopeptidase B | - |
| EGY08_RS26525 | 5283981..5284640 | - | 660 | WP_004122030.1 | exodeoxyribonuclease X | - |
| EGY08_RS26530 | 5284719..5284949 | - | 231 | WP_004122029.1 | DNA polymerase III subunit theta | - |
| EGY08_RS26535 | 5285085..5285459 | + | 375 | WP_123829166.1 | CopC domain-containing protein YobA | - |
| EGY08_RS26540 | 5285464..5286333 | + | 870 | WP_087828997.1 | copper homeostasis membrane protein CopD | - |
| EGY08_RS26545 | 5286350..5286688 | + | 339 | WP_004122026.1 | YebY family protein | - |
| - | 5286788..5286956 | - | 169 | - | - | Antitoxin |
| - | 5286846..5286949 | + | 104 | - | - | Toxin |
| EGY08_RS26550 | 5287074..5288033 | - | 960 | WP_123829167.1 | spore coat U domain-containing protein | - |
| EGY08_RS26555 | 5288048..5290378 | - | 2331 | WP_123829168.1 | fimbrial biogenesis outer membrane usher protein | - |
| EGY08_RS26560 | 5290381..5291145 | - | 765 | WP_123829169.1 | molecular chaperone | - |
| EGY08_RS26565 | 5291164..5291682 | - | 519 | WP_004122022.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T114408 NZ_CP033824:5286846-5286949 [Klebsiella sp. FDAARGOS_511]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT114408 NZ_CP033824:c5286956-5286788 [Klebsiella sp. FDAARGOS_511]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
