Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3105530..3105676 | Replicon | chromosome |
| Accession | NZ_CP033817 | ||
| Organism | Klebsiella aerogenes strain FDAARGOS_513 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3105565..3105668 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3105530..3105676 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGY11_RS15295 | 3100639..3102699 | + | 2061 | WP_032705952.1 | oligopeptidase B | - |
| EGY11_RS15300 | 3102702..3103361 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| EGY11_RS15305 | 3103441..3103671 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| EGY11_RS15310 | 3103806..3104180 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| EGY11_RS15315 | 3104184..3105053 | + | 870 | WP_032705951.1 | copper homeostasis membrane protein CopD | - |
| EGY11_RS15320 | 3105067..3105408 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 3105530..3105676 | - | 147 | - | - | Antitoxin |
| - | 3105565..3105668 | + | 104 | - | - | Toxin |
| EGY11_RS15325 | 3105796..3106743 | - | 948 | WP_032706245.1 | spore coat U domain-containing protein | - |
| EGY11_RS15330 | 3106762..3109086 | - | 2325 | WP_032705949.1 | fimbrial biogenesis outer membrane usher protein | - |
| EGY11_RS15335 | 3109089..3109838 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| EGY11_RS15340 | 3109856..3110374 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T114392 NZ_CP033817:3105565-3105668 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT114392 NZ_CP033817:c3105676-3105530 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
