Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3192822..3192967 | Replicon | chromosome |
| Accession | NZ_CP033780 | ||
| Organism | Citrobacter koseri strain FDAARGOS_530 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3192857..3192960 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3192822..3192967 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX86_RS15340 | 3189278..3189940 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| EGX86_RS15345 | 3189964..3190620 | - | 657 | WP_114847795.1 | carbon-nitrogen hydrolase family protein | - |
| EGX86_RS15350 | 3190726..3190956 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| EGX86_RS15355 | 3191097..3191471 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| EGX86_RS15360 | 3191471..3192346 | + | 876 | WP_114847796.1 | copper homeostasis membrane protein CopD | - |
| EGX86_RS15365 | 3192363..3192701 | + | 339 | WP_012132024.1 | YebY family protein | - |
| - | 3192822..3192967 | - | 146 | - | - | Antitoxin |
| - | 3192857..3192960 | + | 104 | - | - | Toxin |
| EGX86_RS15370 | 3193368..3193559 | - | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| EGX86_RS15375 | 3193929..3196016 | - | 2088 | WP_071259049.1 | TonB-dependent receptor | - |
| EGX86_RS15380 | 3196264..3196926 | + | 663 | WP_047464032.1 | protein-serine/threonine phosphatase | - |
| EGX86_RS15385 | 3196927..3197118 | - | 192 | WP_012132031.1 | YebW family protein | - |
| EGX86_RS15390 | 3197221..3197457 | - | 237 | WP_024130262.1 | DUF1480 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T114327 NZ_CP033780:3192857-3192960 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT114327 NZ_CP033780:c3192967-3192822 [Citrobacter koseri]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
