Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2686726..2686871 | Replicon | chromosome |
| Accession | NZ_CP033777 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_531 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2686762..2686864 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2686726..2686871 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX99_RS15305 | 2681856..2683916 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| EGX99_RS15310 | 2683920..2684579 | - | 660 | WP_080893182.1 | exodeoxyribonuclease X | - |
| EGX99_RS15315 | 2684658..2684888 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EGX99_RS15320 | 2685001..2685375 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EGX99_RS15325 | 2685379..2686248 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| EGX99_RS15330 | 2686265..2686603 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 2686726..2686871 | - | 146 | - | - | Antitoxin |
| - | 2686762..2686864 | + | 103 | - | - | Toxin |
| EGX99_RS29035 | 2687240..2687383 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EGX99_RS15340 | 2687488..2688456 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| EGX99_RS15345 | 2688613..2689266 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| EGX99_RS15350 | 2689263..2689454 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EGX99_RS15355 | 2689552..2689791 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EGX99_RS15360 | 2689907..2691340 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T114312 NZ_CP033777:2686762-2686864 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT114312 NZ_CP033777:c2686871-2686726 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
