Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 807023..807168 | Replicon | chromosome |
| Accession | NZ_CP033756 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_566 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 807059..807161 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 807023..807168 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGY03_RS04830 | 802153..804213 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| EGY03_RS04835 | 804217..804876 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| EGY03_RS04840 | 804955..805185 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EGY03_RS04845 | 805298..805672 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EGY03_RS04850 | 805676..806545 | + | 870 | WP_064172307.1 | copper homeostasis membrane protein CopD | - |
| EGY03_RS04855 | 806562..806900 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 807023..807168 | - | 146 | - | - | Antitoxin |
| - | 807059..807161 | + | 103 | - | - | Toxin |
| EGY03_RS28475 | 807535..807678 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EGY03_RS04865 | 807783..808751 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EGY03_RS04870 | 808908..809561 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| EGY03_RS04875 | 809558..809749 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EGY03_RS04880 | 809847..810086 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EGY03_RS04885 | 810202..811635 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T114243 NZ_CP033756:807059-807161 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT114243 NZ_CP033756:c807168-807023 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
