Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
Location | 1448514..1449048 | Replicon | chromosome |
Accession | NZ_CP033748 | ||
Organism | Burkholderia multivorans strain FDAARGOS_547 |
Toxin (Protein)
Gene name | parE | Uniprot ID | A0A1W0YQN7 |
Locus tag | EGY20_RS06675 | Protein ID | WP_035954873.1 |
Coordinates | 1448749..1449048 (+) | Length | 100 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | J4RB90 |
Locus tag | EGY20_RS06670 | Protein ID | WP_006413656.1 |
Coordinates | 1448514..1448759 (+) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EGY20_RS06655 | 1443574..1445277 | + | 1704 | WP_123789366.1 | VRR-NUC domain-containing protein | - |
EGY20_RS06660 | 1445274..1447574 | + | 2301 | WP_123789367.1 | ATP-dependent DNA helicase | - |
EGY20_RS06665 | 1447605..1448375 | - | 771 | WP_006403543.1 | helix-turn-helix domain-containing protein | - |
EGY20_RS06670 | 1448514..1448759 | + | 246 | WP_006413656.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
EGY20_RS06675 | 1448749..1449048 | + | 300 | WP_035954873.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
EGY20_RS06680 | 1449157..1450458 | - | 1302 | WP_006403538.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
EGY20_RS06685 | 1450683..1451990 | - | 1308 | WP_006403537.1 | shikimate transporter | - |
EGY20_RS06690 | 1452345..1453472 | + | 1128 | WP_123789368.1 | VOC family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11570.09 Da Isoelectric Point: 7.3154
>T114227 WP_035954873.1 NZ_CP033748:1448749-1449048 [Burkholderia multivorans]
MPVKARTVRLTPLAEADLEAIWAYTYERWSLDQAERYIGELSAAFERLARRESVGWPSRAGGNYSRYLVGSHVVFYRETT
ETLDVIRVLHQRMDVDRHL
MPVKARTVRLTPLAEADLEAIWAYTYERWSLDQAERYIGELSAAFERLARRESVGWPSRAGGNYSRYLVGSHVVFYRETT
ETLDVIRVLHQRMDVDRHL
Download Length: 300 bp
>T114227 NZ_CP033748:1448749-1449048 [Burkholderia multivorans]
ATGCCGGTTAAGGCGCGCACGGTACGCCTGACGCCGCTGGCGGAGGCCGACCTCGAGGCCATCTGGGCTTACACGTACGA
GCGCTGGTCGCTCGACCAGGCTGAGCGCTATATCGGCGAGCTGAGCGCGGCGTTCGAGCGGCTGGCGCGCCGGGAGTCGG
TAGGGTGGCCGAGCCGCGCGGGCGGCAACTATTCGCGGTACCTGGTCGGTTCGCACGTGGTGTTCTATCGGGAAACGACC
GAAACCCTTGACGTCATTCGCGTGCTGCACCAGCGGATGGATGTCGACCGACATCTGTAA
ATGCCGGTTAAGGCGCGCACGGTACGCCTGACGCCGCTGGCGGAGGCCGACCTCGAGGCCATCTGGGCTTACACGTACGA
GCGCTGGTCGCTCGACCAGGCTGAGCGCTATATCGGCGAGCTGAGCGCGGCGTTCGAGCGGCTGGCGCGCCGGGAGTCGG
TAGGGTGGCCGAGCCGCGCGGGCGGCAACTATTCGCGGTACCTGGTCGGTTCGCACGTGGTGTTCTATCGGGAAACGACC
GAAACCCTTGACGTCATTCGCGTGCTGCACCAGCGGATGGATGTCGACCGACATCTGTAA
Antitoxin
Download Length: 82 a.a. Molecular weight: 8632.71 Da Isoelectric Point: 6.4604
>AT114227 WP_006413656.1 NZ_CP033748:1448514-1448759 [Burkholderia multivorans]
MARNTSISLGDHLAEFVDMQVASGRYGSASDVVRAGLRLLETQETELRALQEALKAGEASGTPAPFDSQAFLARMRAKHA
G
MARNTSISLGDHLAEFVDMQVASGRYGSASDVVRAGLRLLETQETELRALQEALKAGEASGTPAPFDSQAFLARMRAKHA
G
Download Length: 246 bp
>AT114227 NZ_CP033748:1448514-1448759 [Burkholderia multivorans]
ATGGCACGAAATACATCGATCTCGCTGGGCGATCATCTGGCCGAATTTGTCGACATGCAGGTGGCGTCCGGCCGCTACGG
CTCGGCTAGCGATGTCGTGCGCGCGGGCCTGCGCCTGCTCGAGACACAGGAAACCGAGCTGCGGGCGCTGCAGGAAGCGT
TGAAGGCGGGCGAGGCATCGGGCACACCGGCCCCGTTCGACAGCCAGGCGTTCCTGGCCCGGATGCGGGCCAAGCATGCC
GGTTAA
ATGGCACGAAATACATCGATCTCGCTGGGCGATCATCTGGCCGAATTTGTCGACATGCAGGTGGCGTCCGGCCGCTACGG
CTCGGCTAGCGATGTCGTGCGCGCGGGCCTGCGCCTGCTCGAGACACAGGAAACCGAGCTGCGGGCGCTGCAGGAAGCGT
TGAAGGCGGGCGAGGCATCGGGCACACCGGCCCCGTTCGACAGCCAGGCGTTCCTGGCCCGGATGCGGGCCAAGCATGCC
GGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1W0YQN7 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H3KUX0 |