Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 632029..632170 | Replicon | chromosome |
| Accession | NZ_CP033744 | ||
| Organism | Citrobacter freundii strain FDAARGOS_549 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 632032..632135 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 632029..632170 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX89_RS03930 | 627825..628085 | + | 261 | WP_080953256.1 | hypothetical protein | - |
| EGX89_RS03935 | 628063..629142 | + | 1080 | WP_123924777.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| EGX89_RS03940 | 629230..630702 | - | 1473 | WP_123924778.1 | hypothetical protein | - |
| EGX89_RS03945 | 630704..631774 | - | 1071 | WP_123924779.1 | nucleoid-associated protein | - |
| - | 632029..632170 | + | 142 | - | - | Antitoxin |
| - | 632032..632135 | - | 104 | - | - | Toxin |
| EGX89_RS03950 | 632291..632629 | - | 339 | WP_003034934.1 | YebY family protein | - |
| EGX89_RS03955 | 632650..633522 | - | 873 | WP_121571827.1 | copper homeostasis membrane protein CopD | - |
| EGX89_RS03960 | 633526..633900 | - | 375 | WP_121571828.1 | CopC domain-containing protein YobA | - |
| EGX89_RS03965 | 634044..634274 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| EGX89_RS03970 | 634381..635037 | + | 657 | WP_121571829.1 | carbon-nitrogen hydrolase family protein | - |
| EGX89_RS03975 | 635061..635723 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T114204 NZ_CP033744:c632135-632032 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT114204 NZ_CP033744:632029-632170 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
