Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 449284..449424 | Replicon | chromosome |
| Accession | NZ_CP033742 | ||
| Organism | Citrobacter freundii strain FDAARGOS_550 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 449286..449389 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 449284..449424 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGY10_RS02290 | 446451..447536 | + | 1086 | WP_057101942.1 | recombinase RecT | - |
| EGY10_RS02295 | 447575..447817 | + | 243 | WP_057101943.1 | DUF4060 family protein | - |
| EGY10_RS02300 | 447882..448154 | + | 273 | WP_072276910.1 | excisionase | - |
| EGY10_RS02305 | 448123..449208 | + | 1086 | WP_057101944.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 449284..449424 | + | 141 | - | - | Antitoxin |
| - | 449286..449389 | - | 104 | - | - | Toxin |
| EGY10_RS02310 | 449545..449883 | - | 339 | WP_003833793.1 | YebY family protein | - |
| EGY10_RS02315 | 449904..450776 | - | 873 | WP_049002332.1 | copper homeostasis membrane protein CopD | - |
| EGY10_RS02320 | 450780..451154 | - | 375 | WP_121540153.1 | CopC domain-containing protein YobA | - |
| EGY10_RS02325 | 451298..451528 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| EGY10_RS02330 | 451635..452291 | + | 657 | WP_121540154.1 | carbon-nitrogen hydrolase family protein | - |
| EGY10_RS02335 | 452315..452977 | + | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 397733..455046 | 57313 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T114187 NZ_CP033742:c449389-449286 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT114187 NZ_CP033742:449284-449424 [Citrobacter freundii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
