Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 2776930..2777450 Replicon chromosome
Accession NZ_CP033721
Organism Clavibacter michiganensis subsp. nebraskensis strain HF4

Toxin (Protein)


Gene name parE Uniprot ID M5BDX6
Locus tag EGX36_RS13120 Protein ID WP_015491236.1
Coordinates 2776930..2777220 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A399PXI2
Locus tag EGX36_RS13125 Protein ID WP_041465310.1
Coordinates 2777217..2777450 (-) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EGX36_RS13105 2774879..2776477 + 1599 WP_015491235.1 class I SAM-dependent methyltransferase -
EGX36_RS13110 2776505..2776609 - 105 WP_080606018.1 hypothetical protein -
EGX36_RS13115 2776633..2776890 + 258 Protein_2574 helix-turn-helix transcriptional regulator -
EGX36_RS13120 2776930..2777220 - 291 WP_015491236.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
EGX36_RS13125 2777217..2777450 - 234 WP_041465310.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
EGX36_RS13130 2777562..2777762 - 201 WP_015491238.1 hypothetical protein -
EGX36_RS13135 2777778..2778005 - 228 WP_015491239.1 antitoxin VbhA family protein -
EGX36_RS13140 2778088..2779161 + 1074 WP_155119035.1 LD-carboxypeptidase -
EGX36_RS13145 2779338..2779697 + 360 WP_015491241.1 hypothetical protein -
EGX36_RS13150 2779894..2780373 + 480 WP_015491243.1 hypothetical protein -
EGX36_RS13155 2780520..2781557 + 1038 WP_015491244.1 DUF1266 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Antitoxin ParD

(4-72)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11338.63 Da        Isoelectric Point: 6.4832

>T114168 WP_015491236.1 NZ_CP033721:c2777220-2776930 [Clavibacter michiganensis subsp. nebraskensis]
VKPHRLTPAATKDLSEIWDYTEERWDADQAETYVREIGAAIRRVAEDPTRGRDCGDIRPGYRRYSIESHTVYYVDRPETV
DVIRILHQRMDPSRHL

Download         Length: 291 bp

>T114168 NZ_CP033721:c2777220-2776930 [Clavibacter michiganensis subsp. nebraskensis]
GTGAAGCCGCACCGGCTCACGCCGGCCGCGACGAAGGACCTCTCCGAGATCTGGGACTACACGGAGGAGCGCTGGGACGC
CGATCAGGCTGAGACCTATGTCCGGGAGATCGGCGCCGCGATCAGGCGGGTCGCCGAAGACCCCACGCGCGGCCGTGACT
GCGGCGACATCCGCCCGGGCTACCGGCGGTACAGCATCGAGAGCCACACCGTGTACTACGTGGACCGACCCGAGACGGTC
GACGTGATCCGGATCCTGCATCAGCGGATGGACCCGTCGCGCCATCTGTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8268.18 Da        Isoelectric Point: 4.4000

>AT114168 WP_041465310.1 NZ_CP033721:c2777450-2777217 [Clavibacter michiganensis subsp. nebraskensis]
MAQNTSISLDGHFTGFLAREVESGRYRSASEVVRAGLRLLEDQETQLEALRAALVAGEASGEAAPFDLDAFIADKRA

Download         Length: 234 bp

>AT114168 NZ_CP033721:c2777450-2777217 [Clavibacter michiganensis subsp. nebraskensis]
ATGGCGCAGAACACCTCGATCAGCCTGGACGGGCACTTCACCGGCTTCCTCGCCCGGGAGGTGGAGTCCGGGCGCTACCG
ATCCGCGAGCGAGGTGGTCCGCGCCGGGCTCCGTCTCCTGGAGGACCAGGAGACGCAGCTCGAAGCGCTGCGTGCGGCGC
TGGTCGCCGGCGAGGCGAGCGGCGAGGCCGCACCGTTCGACCTCGACGCGTTCATCGCGGACAAGCGCGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB M5BDX6

Antitoxin

Source ID Structure
AlphaFold DB A0A399PXI2

References