Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 757457..757551 Replicon chromosome
Accession NZ_CP033717
Organism Yersinia pseudotuberculosis strain FDAARGOS_579

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 757458..757551 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 757457..757551 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EGX53_RS04035 752644..754722 - 2079 WP_012304223.1 flagellar biosynthesis protein FlhA -
EGX53_RS04040 754722..755882 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
EGX53_RS04050 756414..756878 + 465 WP_011192280.1 hypothetical protein -
EGX53_RS04055 756872..757198 + 327 WP_011192279.1 DUF1493 family protein -
- 757457..757551 + 95 - - Antitoxin
- 757458..757551 - 94 - - Toxin
EGX53_RS04065 757721..758062 - 342 WP_002211095.1 YebY family protein -
EGX53_RS04070 758159..759043 - 885 WP_012304224.1 copper homeostasis membrane protein CopD -
EGX53_RS04075 759046..759432 - 387 WP_002211093.1 CopC domain-containing protein YobA -
EGX53_RS04080 759811..760320 - 510 WP_002211092.1 non-heme ferritin -
EGX53_RS04085 760721..760951 + 231 WP_002211091.1 DNA polymerase III subunit theta -
EGX53_RS04090 761011..761961 - 951 WP_012304225.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T114156 NZ_CP033717:c757551-757458 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT114156 NZ_CP033717:757457-757551 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References