Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3768730..3768824 Replicon chromosome
Accession NZ_CP033715
Organism Yersinia pseudotuberculosis strain FDAARGOS_580

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3768730..3768823 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3768730..3768824 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EGX52_RS17820 3764320..3765270 + 951 WP_011192157.1 prolyl aminopeptidase -
EGX52_RS17825 3765330..3765560 - 231 WP_002211091.1 DNA polymerase III subunit theta -
EGX52_RS17830 3765961..3766470 + 510 WP_002211092.1 non-heme ferritin -
EGX52_RS17835 3766849..3767235 + 387 WP_002211093.1 CopC domain-containing protein YobA -
EGX52_RS17840 3767238..3768122 + 885 WP_012304224.1 copper homeostasis membrane protein CopD -
EGX52_RS17845 3768219..3768560 + 342 WP_002211095.1 YebY family protein -
- 3768730..3768823 + 94 - - Toxin
- 3768730..3768824 - 95 - - Antitoxin
EGX52_RS17855 3769083..3769409 - 327 WP_002211097.1 DUF1493 family protein -
EGX52_RS17860 3769403..3769861 - 459 WP_002211098.1 hypothetical protein -
EGX52_RS17870 3770380..3771540 + 1161 WP_050320623.1 flagellar type III secretion system protein FlhB -
EGX52_RS17875 3771540..3773618 + 2079 WP_012413652.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T114144 NZ_CP033715:3768730-3768823 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT114144 NZ_CP033715:c3768824-3768730 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References