Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | /COG5642-COG5654 |
Location | 389902..390902 | Replicon | chromosome |
Accession | NZ_CP033711 | ||
Organism | Yersinia pseudotuberculosis strain FDAARGOS_582 |
Toxin (Protein)
Gene name | - | Uniprot ID | Q66A68 |
Locus tag | EGX44_RS02420 | Protein ID | WP_011192520.1 |
Coordinates | 389902..390360 (-) | Length | 153 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | Q66A69 |
Locus tag | EGX44_RS02425 | Protein ID | WP_002210982.1 |
Coordinates | 390456..390902 (-) | Length | 149 a.a. |
Genomic Context
Location: 385716..386381 (666 bp)
Type: Others
Protein ID: WP_002210975.1
Type: Others
Protein ID: WP_002210975.1
Location: 386543..386770 (228 bp)
Type: Others
Protein ID: WP_002210976.1
Type: Others
Protein ID: WP_002210976.1
Location: 386770..387129 (360 bp)
Type: Others
Protein ID: WP_002210977.1
Type: Others
Protein ID: WP_002210977.1
Location: 387214..387456 (243 bp)
Type: Others
Protein ID: WP_002216375.1
Type: Others
Protein ID: WP_002216375.1
Location: 387437..388834 (1398 bp)
Type: Others
Protein ID: WP_012105043.1
Type: Others
Protein ID: WP_012105043.1
Location: 388831..389892 (1062 bp)
Type: Others
Protein ID: WP_012413752.1
Type: Others
Protein ID: WP_012413752.1
Location: 391239..392816 (1578 bp)
Type: Others
Protein ID: WP_011192519.1
Type: Others
Protein ID: WP_011192519.1
Location: 393646..394626 (981 bp)
Type: Others
Protein ID: WP_012413751.1
Type: Others
Protein ID: WP_012413751.1
Location: 389902..390360 (459 bp)
Type: Toxin
Protein ID: WP_011192520.1
Type: Toxin
Protein ID: WP_011192520.1
Location: 390456..390902 (447 bp)
Type: Antitoxin
Protein ID: WP_002210982.1
Type: Antitoxin
Protein ID: WP_002210982.1
Location: 392980..393483 (504 bp)
Type: Others
Protein ID: WP_002210984.1
Type: Others
Protein ID: WP_002210984.1
Location: 394668..395375 (708 bp)
Type: Others
Protein ID: WP_038823925.1
Type: Others
Protein ID: WP_038823925.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EGX44_RS02390 | 385716..386381 | + | 666 | WP_002210975.1 | phage shock protein PspA | - |
EGX44_RS02395 | 386543..386770 | + | 228 | WP_002210976.1 | envelope stress response membrane protein PspB | - |
EGX44_RS02400 | 386770..387129 | + | 360 | WP_002210977.1 | envelope stress response membrane protein PspC | - |
EGX44_RS02405 | 387214..387456 | + | 243 | WP_002216375.1 | phage shock protein PspD | - |
EGX44_RS02410 | 387437..388834 | + | 1398 | WP_012105043.1 | YcjX family protein | - |
EGX44_RS02415 | 388831..389892 | + | 1062 | WP_012413752.1 | YcjF family protein | - |
EGX44_RS02420 | 389902..390360 | - | 459 | WP_011192520.1 | RES family NAD+ phosphorylase | Toxin |
EGX44_RS02425 | 390456..390902 | - | 447 | WP_002210982.1 | DUF2384 domain-containing protein | Antitoxin |
EGX44_RS02430 | 391239..392816 | + | 1578 | WP_011192519.1 | transcriptional regulator TyrR | - |
EGX44_RS02435 | 392980..393483 | - | 504 | WP_002210984.1 | thiol peroxidase | - |
EGX44_RS02440 | 393646..394626 | + | 981 | WP_012413751.1 | L-Ala-D/L-Glu epimerase | - |
EGX44_RS02445 | 394668..395375 | - | 708 | WP_038823925.1 | murein tripeptide amidase MpaA | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 153 a.a. Molecular weight: 17008.41 Da Isoelectric Point: 4.8732
>T114107 WP_011192520.1 NZ_CP033711:c390360-389902 [Yersinia pseudotuberculosis]
MTLYRIVMRRYLASAWTGYGAEIYGGRWNHKGHAAIYLASSISLAMLETLAHIQDSSTLSEFELFQIEISDSSIMLLQPQ
DWPTDWRSDPAPVATMDVGTEWLESESSLGLLVPSTLVPSENNLLVNPHHKDFPACLASVKPLSFVFDPRLK
MTLYRIVMRRYLASAWTGYGAEIYGGRWNHKGHAAIYLASSISLAMLETLAHIQDSSTLSEFELFQIEISDSSIMLLQPQ
DWPTDWRSDPAPVATMDVGTEWLESESSLGLLVPSTLVPSENNLLVNPHHKDFPACLASVKPLSFVFDPRLK
Download Length: 459 bp
>T114107 NZ_CP033711:c390360-389902 [Yersinia pseudotuberculosis]
ATGACGCTATACCGCATTGTTATGCGCCGCTATCTTGCATCGGCATGGACTGGTTACGGCGCTGAAATCTATGGTGGTCG
TTGGAATCATAAAGGCCATGCTGCCATCTATTTAGCCAGCAGTATTTCATTGGCTATGCTCGAAACACTGGCTCATATTC
AGGACAGTTCAACACTCAGCGAATTTGAATTATTCCAAATTGAAATCAGTGACAGCAGTATTATGTTGCTACAGCCGCAG
GACTGGCCCACGGATTGGCGTAGCGATCCGGCACCGGTGGCAACGATGGATGTCGGCACCGAGTGGCTGGAATCAGAATC
CTCGCTAGGCTTACTGGTCCCGTCCACGTTGGTGCCGTCAGAAAACAACCTACTGGTCAATCCTCATCACAAAGATTTTC
CAGCGTGTTTGGCCAGCGTCAAACCGCTCTCTTTTGTCTTTGATCCACGGTTAAAATAG
ATGACGCTATACCGCATTGTTATGCGCCGCTATCTTGCATCGGCATGGACTGGTTACGGCGCTGAAATCTATGGTGGTCG
TTGGAATCATAAAGGCCATGCTGCCATCTATTTAGCCAGCAGTATTTCATTGGCTATGCTCGAAACACTGGCTCATATTC
AGGACAGTTCAACACTCAGCGAATTTGAATTATTCCAAATTGAAATCAGTGACAGCAGTATTATGTTGCTACAGCCGCAG
GACTGGCCCACGGATTGGCGTAGCGATCCGGCACCGGTGGCAACGATGGATGTCGGCACCGAGTGGCTGGAATCAGAATC
CTCGCTAGGCTTACTGGTCCCGTCCACGTTGGTGCCGTCAGAAAACAACCTACTGGTCAATCCTCATCACAAAGATTTTC
CAGCGTGTTTGGCCAGCGTCAAACCGCTCTCTTTTGTCTTTGATCCACGGTTAAAATAG
Antitoxin
Download Length: 149 a.a. Molecular weight: 16401.94 Da Isoelectric Point: 9.7155
>AT114107 WP_002210982.1 NZ_CP033711:c390902-390456 [Yersinia pseudotuberculosis]
MRAYRPNPATKMGTLWREIGLPASRGTILVDSIKMGFSVDVIDSIHLWASMPKAEILRATGIPSRSLTRRRTHDGRFTPE
ESERIARFVRVMDAAVDLFGGDKGKAITWMSTPIKGLGYRSPDSLLETETGALEVCDLIGRLEHGVFT
MRAYRPNPATKMGTLWREIGLPASRGTILVDSIKMGFSVDVIDSIHLWASMPKAEILRATGIPSRSLTRRRTHDGRFTPE
ESERIARFVRVMDAAVDLFGGDKGKAITWMSTPIKGLGYRSPDSLLETETGALEVCDLIGRLEHGVFT
Download Length: 447 bp
>AT114107 NZ_CP033711:c390902-390456 [Yersinia pseudotuberculosis]
ATGAGAGCGTACCGCCCAAACCCCGCGACTAAAATGGGAACGCTTTGGCGTGAAATTGGCTTACCCGCCAGCCGCGGCAC
GATATTGGTCGATAGTATCAAAATGGGGTTTTCTGTTGATGTTATCGACAGCATTCATTTATGGGCATCCATGCCTAAAG
CTGAAATATTACGTGCTACCGGTATCCCCAGCCGTAGCCTGACTCGCCGCCGCACACATGATGGCCGTTTTACGCCTGAA
GAAAGCGAGAGAATCGCACGTTTTGTCCGCGTAATGGATGCCGCTGTCGATTTGTTCGGCGGCGATAAAGGTAAAGCCAT
TACCTGGATGTCCACGCCCATCAAAGGATTGGGGTATCGCAGCCCAGACTCCTTACTGGAAACCGAAACTGGCGCACTGG
AAGTGTGTGATTTGATTGGTCGTTTGGAACACGGCGTCTTTACTTAA
ATGAGAGCGTACCGCCCAAACCCCGCGACTAAAATGGGAACGCTTTGGCGTGAAATTGGCTTACCCGCCAGCCGCGGCAC
GATATTGGTCGATAGTATCAAAATGGGGTTTTCTGTTGATGTTATCGACAGCATTCATTTATGGGCATCCATGCCTAAAG
CTGAAATATTACGTGCTACCGGTATCCCCAGCCGTAGCCTGACTCGCCGCCGCACACATGATGGCCGTTTTACGCCTGAA
GAAAGCGAGAGAATCGCACGTTTTGTCCGCGTAATGGATGCCGCTGTCGATTTGTTCGGCGGCGATAAAGGTAAAGCCAT
TACCTGGATGTCCACGCCCATCAAAGGATTGGGGTATCGCAGCCCAGACTCCTTACTGGAAACCGAAACTGGCGCACTGG
AAGTGTGTGATTTGATTGGTCGTTTGGAACACGGCGTCTTTACTTAA
Structures
Toxin
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Source | ID | Structure |
---|---|---|
AlphaFold DB | Q66A68 |
Antitoxin
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Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0E8XFL1 |