Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3922688..3922782 | Replicon | chromosome |
| Accession | NZ_CP033709 | ||
| Organism | Yersinia pseudotuberculosis strain FDAARGOS_583 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3922689..3922782 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3922688..3922782 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX39_RS18505 | 3918659..3919819 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
| EGX39_RS18515 | 3920328..3920639 | + | 312 | Protein_3319 | hypothetical protein | - |
| EGX39_RS18520 | 3920712..3921920 | + | 1209 | WP_032466051.1 | IS256 family transposase | - |
| EGX39_RS18530 | 3922103..3922429 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 3922688..3922782 | + | 95 | - | - | Antitoxin |
| - | 3922689..3922782 | - | 94 | - | - | Toxin |
| EGX39_RS18540 | 3922952..3923293 | - | 342 | WP_002211095.1 | YebY family protein | - |
| EGX39_RS18545 | 3923390..3924274 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| EGX39_RS18550 | 3924277..3924663 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| EGX39_RS18555 | 3925076..3925585 | - | 510 | WP_011192158.1 | non-heme ferritin | - |
| EGX39_RS18560 | 3925986..3926216 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| EGX39_RS18565 | 3926276..3927226 | - | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 3920712..3921920 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T114098 NZ_CP033709:c3922782-3922689 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT114098 NZ_CP033709:3922688-3922782 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
