Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3152630..3152724 Replicon chromosome
Accession NZ_CP033707
Organism Yersinia pseudotuberculosis strain FDAARGOS_584

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3152631..3152724 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3152630..3152724 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EGX87_RS14855 3147817..3149895 - 2079 WP_012304223.1 flagellar biosynthesis protein FlhA -
EGX87_RS14860 3149895..3151055 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
EGX87_RS14870 3151587..3152051 + 465 WP_011192280.1 hypothetical protein -
EGX87_RS14875 3152045..3152371 + 327 WP_011192279.1 DUF1493 family protein -
- 3152630..3152724 + 95 - - Antitoxin
- 3152631..3152724 - 94 - - Toxin
EGX87_RS14885 3152894..3153235 - 342 WP_002211095.1 YebY family protein -
EGX87_RS14890 3153332..3154216 - 885 WP_012304224.1 copper homeostasis membrane protein CopD -
EGX87_RS14895 3154219..3154605 - 387 WP_002211093.1 CopC domain-containing protein YobA -
EGX87_RS14900 3154984..3155493 - 510 WP_002211092.1 non-heme ferritin -
EGX87_RS14905 3155894..3156124 + 231 WP_002211091.1 DNA polymerase III subunit theta -
EGX87_RS14910 3156184..3157134 - 951 WP_012304225.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T114082 NZ_CP033707:c3152724-3152631 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT114082 NZ_CP033707:3152630-3152724 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References