Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1798692..1798786 Replicon chromosome
Accession NZ_CP033699
Organism Yersinia pestis strain FDAARGOS_601

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1798692..1798785 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1798692..1798786 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EGX46_RS09070 1794275..1795204 + 930 WP_002220513.1 prolyl aminopeptidase -
EGX46_RS09075 1795264..1795494 - 231 WP_002211091.1 DNA polymerase III subunit theta -
EGX46_RS09080 1795895..1796404 + 510 WP_002211092.1 non-heme ferritin -
EGX46_RS09085 1796811..1797197 + 387 WP_002211093.1 CopC domain-containing protein YobA -
EGX46_RS09090 1797200..1798084 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
EGX46_RS09095 1798181..1798522 + 342 WP_002211095.1 YebY family protein -
- 1798692..1798785 + 94 - - Toxin
- 1798692..1798786 - 95 - - Antitoxin
EGX46_RS09105 1799045..1799371 - 327 WP_002211097.1 DUF1493 family protein -
EGX46_RS09110 1799365..1799823 - 459 WP_002211098.1 hypothetical protein -
EGX46_RS09120 1800355..1801515 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
EGX46_RS09125 1801515..1803593 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T114058 NZ_CP033699:1798692-1798785 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT114058 NZ_CP033699:c1798786-1798692 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References