Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4302596..4302690 | Replicon | chromosome |
| Accession | NZ_CP033696 | ||
| Organism | Yersinia pestis strain FDAARGOS_602 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4302597..4302690 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4302596..4302690 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX42_RS21300 | 4297789..4299867 | - | 2079 | WP_002211100.1 | flagellar biosynthesis protein FlhA | - |
| EGX42_RS21305 | 4299867..4301027 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
| EGX42_RS21315 | 4301559..4302017 | + | 459 | WP_002211098.1 | hypothetical protein | - |
| EGX42_RS21320 | 4302011..4302337 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 4302596..4302690 | + | 95 | - | - | Antitoxin |
| - | 4302597..4302690 | - | 94 | - | - | Toxin |
| EGX42_RS21330 | 4302860..4303201 | - | 342 | WP_002211095.1 | YebY family protein | - |
| EGX42_RS21335 | 4303298..4304182 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| EGX42_RS21340 | 4304185..4304571 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| EGX42_RS21345 | 4304986..4305495 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| EGX42_RS21350 | 4305896..4306126 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| EGX42_RS21355 | 4306186..4307136 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T114044 NZ_CP033696:c4302690-4302597 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT114044 NZ_CP033696:4302596-4302690 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
