Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2923787..2923881 Replicon chromosome
Accession NZ_CP033690
Organism Yersinia pestis strain FDAARGOS_603

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2923787..2923880 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2923787..2923881 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EGX74_RS14075 2919359..2920309 + 951 WP_002211090.1 prolyl aminopeptidase -
EGX74_RS14080 2920369..2920599 - 231 WP_002211091.1 DNA polymerase III subunit theta -
EGX74_RS14085 2921000..2921509 + 510 WP_002211092.1 non-heme ferritin -
EGX74_RS14090 2921906..2922292 + 387 WP_002211093.1 CopC domain-containing protein YobA -
EGX74_RS14095 2922295..2923179 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
EGX74_RS14100 2923276..2923617 + 342 WP_002211095.1 YebY family protein -
- 2923787..2923880 + 94 - - Toxin
- 2923787..2923881 - 95 - - Antitoxin
EGX74_RS14110 2924140..2924466 - 327 WP_002211097.1 DUF1493 family protein -
EGX74_RS14115 2924460..2924918 - 459 WP_002211098.1 hypothetical protein -
EGX74_RS14125 2925450..2926610 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
EGX74_RS14130 2926610..2928688 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T114028 NZ_CP033690:2923787-2923880 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT114028 NZ_CP033690:c2923881-2923787 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References