Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2739688..2739959 | Replicon | chromosome |
| Accession | NZ_CP033635 | ||
| Organism | Escherichia coli isolate ECCNB12-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2739726..2739828 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2739688..2739959 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CQP61_RS16230 | 2736845..2738284 | + | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CQP61_RS16235 | 2738402..2738638 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CQP61_RS16240 | 2738743..2738934 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CQP61_RS16245 | 2738935..2739591 | - | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| - | 2739688..2739959 | + | 272 | - | - | Antitoxin |
| - | 2739726..2739828 | - | 103 | - | - | Toxin |
| CQP61_RS16250 | 2739987..2740328 | - | 342 | WP_000976474.1 | YebY family protein | - |
| CQP61_RS16255 | 2740341..2741213 | - | 873 | WP_000879322.1 | copper homeostasis membrane protein CopD | - |
| CQP61_RS16260 | 2741217..2741591 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| CQP61_RS16265 | 2741730..2741960 | + | 231 | WP_024176156.1 | DNA polymerase III subunit theta | - |
| CQP61_RS16270 | 2742062..2742718 | + | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| CQP61_RS16275 | 2742742..2743404 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T113950 NZ_CP033635:c2739828-2739726 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT113950 NZ_CP033635:2739688-2739959 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
