Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2178867..2179011 | Replicon | chromosome |
| Accession | NZ_CP033631 | ||
| Organism | Klebsiella sp. P1CD1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2178903..2179005 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2178867..2179011 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DTA24_RS10885 | 2173997..2176057 | + | 2061 | WP_032746815.1 | oligopeptidase B | - |
| DTA24_RS10890 | 2176061..2176720 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| DTA24_RS10895 | 2176799..2177029 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| DTA24_RS10900 | 2177143..2177517 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| DTA24_RS10905 | 2177521..2178390 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| DTA24_RS10910 | 2178407..2178745 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 2178867..2179011 | - | 145 | - | - | Antitoxin |
| - | 2178903..2179005 | + | 103 | - | - | Toxin |
| DTA24_RS28080 | 2179390..2179533 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| DTA24_RS10920 | 2179637..2180605 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| DTA24_RS10925 | 2180762..2181415 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| DTA24_RS10930 | 2181412..2181603 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DTA24_RS10935 | 2181701..2181940 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DTA24_RS10940 | 2182056..2183489 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T113912 NZ_CP033631:2178903-2179005 [Klebsiella sp. P1CD1]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT113912 NZ_CP033631:c2179011-2178867 [Klebsiella sp. P1CD1]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
