Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2504442..2504524 | Replicon | chromosome |
| Accession | NZ_CP033622 | ||
| Organism | Dickeya zeae strain CE1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2504442..2504522 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2504442..2504524 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DWG24_RS11000 | 2499901..2501835 | + | 1935 | WP_012884836.1 | protein kinase YeaG | - |
| DWG24_RS11005 | 2501872..2503149 | + | 1278 | WP_168362555.1 | YeaH/YhbH family protein | - |
| DWG24_RS11010 | 2503243..2503638 | - | 396 | WP_102801720.1 | hypothetical protein | - |
| DWG24_RS11015 | 2503934..2504272 | + | 339 | WP_168362556.1 | YebY family protein | - |
| - | 2504442..2504522 | + | 81 | - | - | Toxin |
| - | 2504442..2504524 | - | 83 | - | - | Antitoxin |
| DWG24_RS11020 | 2504675..2504902 | + | 228 | WP_168362557.1 | hypothetical protein | - |
| DWG24_RS11025 | 2505173..2505925 | - | 753 | WP_038914011.1 | IclR family transcriptional regulator | - |
| DWG24_RS11030 | 2506329..2506721 | + | 393 | WP_016941272.1 | RidA family protein | - |
| DWG24_RS11035 | 2506860..2507696 | + | 837 | WP_168362558.1 | transporter substrate-binding domain-containing protein | - |
| DWG24_RS11040 | 2507746..2508486 | + | 741 | WP_168362559.1 | amino acid ABC transporter permease | - |
| DWG24_RS11045 | 2508483..2509127 | + | 645 | WP_168362560.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T113867 NZ_CP033622:2504442-2504522 [Dickeya zeae]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT113867 NZ_CP033622:c2504524-2504442 [Dickeya zeae]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
