Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2430509..2430780 | Replicon | chromosome |
| Accession | NZ_CP033605 | ||
| Organism | Escherichia coli O157:H7 strain TR01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2430547..2430650 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2430509..2430780 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EEL45_RS12535 | 2427666..2429105 | + | 1440 | WP_123178863.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EEL45_RS12540 | 2429223..2429459 | + | 237 | WP_085453913.1 | DUF1480 family protein | - |
| EEL45_RS12545 | 2429564..2429755 | + | 192 | WP_001313035.1 | YebW family protein | - |
| EEL45_RS12550 | 2429756..2430412 | - | 657 | WP_123178401.1 | protein-serine/threonine phosphatase | - |
| - | 2430509..2430780 | + | 272 | - | - | Antitoxin |
| - | 2430547..2430650 | - | 104 | - | - | Toxin |
| EEL45_RS12555 | 2430808..2431149 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EEL45_RS12560 | 2431161..2432033 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| EEL45_RS12565 | 2432037..2432411 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EEL45_RS12570 | 2432550..2432780 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EEL45_RS12575 | 2432882..2433538 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EEL45_RS12580 | 2433562..2434224 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T113843 NZ_CP033605:c2430650-2430547 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT113843 NZ_CP033605:2430509-2430780 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
