Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 154577..154811 | Replicon | chromosome |
| Accession | NZ_CP033510 | ||
| Organism | Shigella flexneri strain 2016AM-0877 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 154578..154681 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 154577..154811 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EEL47_RS00745 | 150023..150490 | - | 468 | Protein_146 | DNA-binding transcriptional regulator PgrR | - |
| EEL47_RS00750 | 150554..150864 | + | 311 | Protein_147 | transposase | - |
| EEL47_RS00755 | 150907..152102 | - | 1196 | Protein_148 | IS3 family transposase | - |
| EEL47_RS00760 | 152157..153005 | + | 849 | Protein_149 | IS3-like element IS600 family transposase | - |
| EEL47_RS00765 | 153122..153403 | + | 282 | WP_005127484.1 | excisionase | - |
| EEL47_RS26040 | 153369..154446 | + | 1078 | Protein_151 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 154577..154811 | + | 235 | - | - | Antitoxin |
| - | 154578..154681 | - | 104 | - | - | Toxin |
| EEL47_RS00785 | 154839..155180 | - | 342 | WP_000976476.1 | YebY family protein | - |
| EEL47_RS00790 | 155193..156065 | - | 873 | Protein_153 | copper homeostasis membrane protein CopD | - |
| EEL47_RS00795 | 156069..156443 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EEL47_RS00800 | 156582..156812 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EEL47_RS00805 | 156914..157570 | + | 657 | Protein_156 | carbon-nitrogen hydrolase family protein | - |
| EEL47_RS00810 | 157594..158256 | + | 663 | WP_000944268.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T113767 NZ_CP033510:c154681-154578 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT113767 NZ_CP033510:154577-154811 [Shigella flexneri]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
