Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1393381..1393521 | Replicon | chromosome |
| Accession | NZ_CP033504 | ||
| Organism | Serratia sp. LS-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1393425..1393521 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1393381..1393521 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EDY99_RS06770 | 1388601..1389026 | + | 426 | WP_033642714.1 | RNA polymerase-binding protein DksA | - |
| EDY99_RS06775 | 1389204..1390157 | + | 954 | WP_033644252.1 | prolyl aminopeptidase | - |
| EDY99_RS06780 | 1390189..1390419 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| EDY99_RS06785 | 1390760..1391278 | + | 519 | WP_123061604.1 | non-heme ferritin | - |
| EDY99_RS06790 | 1391572..1391988 | + | 417 | WP_123061605.1 | CopC domain-containing protein YobA | - |
| EDY99_RS06795 | 1391991..1392872 | + | 882 | WP_033642717.1 | copper homeostasis membrane protein CopD | - |
| EDY99_RS06800 | 1392942..1393283 | + | 342 | WP_016928154.1 | YebY family protein | - |
| - | 1393381..1393521 | - | 141 | - | - | Antitoxin |
| - | 1393425..1393521 | + | 97 | - | - | Toxin |
| EDY99_RS06805 | 1393774..1394178 | + | 405 | WP_060659651.1 | hypothetical protein | - |
| EDY99_RS06810 | 1394175..1394393 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| EDY99_RS06815 | 1394468..1394812 | - | 345 | WP_033642719.1 | hypothetical protein | - |
| EDY99_RS06820 | 1395061..1395411 | + | 351 | WP_033652016.1 | DUF4377 domain-containing protein | - |
| EDY99_RS06825 | 1395462..1395764 | - | 303 | WP_016928136.1 | hypothetical protein | - |
| EDY99_RS06830 | 1395764..1396315 | - | 552 | WP_164489272.1 | DUF4225 domain-containing protein | - |
| EDY99_RS24545 | 1396345..1396539 | - | 195 | WP_144236179.1 | hypothetical protein | - |
| EDY99_RS06835 | 1396816..1398015 | + | 1200 | WP_033652019.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T113748 NZ_CP033504:1393425-1393521 [Serratia sp. LS-1]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT113748 NZ_CP033504:c1393521-1393381 [Serratia sp. LS-1]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
